Variant report

Variant	rs12572941
Chromosome Location	chr10:112570130-112570131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112564097..112567793-chr10:112569786..112571719,3	MCF-7	breast:
2	chr10:112550404..112551152-chr10:112569783..112570494,2	MCF-7	breast:
3	chr10:112569140..112570690-chr10:112677431..112679677,2	K562	blood:
4	chr10:112549301..112550080-chr10:112569684..112570585,2	MCF-7	breast:
5	chr10:112549301..112550693-chr10:112569658..112570585,7	MCF-7	breast:
6	chr10:112567996..112570868-chr10:112574019..112576612,3	K562	blood:
7	chr10:112569973..112573106-chr10:112630390..112633611,4	MCF-7	breast:
8	chr10:112566469..112571087-chr10:112574225..112578785,5	MCF-7	breast:
9	chr10:112568063..112572622-chr10:112629756..112633455,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203497	Chromatin interaction
ENSG00000214413	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000150593	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10787286	1.00[CHB][hapmap]
rs12256157	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2146544	1.00[CHB][hapmap]
rs4917589	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112570200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
3	chr10:112562800-112576800	Weak transcription	Psoas Muscle	Psoas
4	chr10:112563000-112572800	Enhancers	Fetal Heart	heart
5	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:112564200-112570400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:112564200-112572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:112564200-112572200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:112564200-112572400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:112564200-112572600	Weak transcription	K562	blood
11	chr10:112564200-112575000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:112564200-112579200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:112564400-112571600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:112564800-112570200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:112565400-112576000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:112565600-112574800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:112567200-112570200	Enhancers	Pancreas	Pancrea
18	chr10:112567400-112571000	Enhancers	Right Atrium	heart
19	chr10:112567400-112576200	Weak transcription	HSMMtube	muscle
20	chr10:112568000-112575200	Weak transcription	Esophagus	oesophagus
21	chr10:112568200-112573000	Weak transcription	Primary T cells from cord blood	blood
22	chr10:112568400-112573600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:112568400-112575800	Weak transcription	Gastric	stomach
24	chr10:112568600-112577400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:112568800-112573000	Weak transcription	Stomach Mucosa	stomach
26	chr10:112568800-112573800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:112569000-112572400	Weak transcription	Fetal Intestine Small	intestine
28	chr10:112569000-112573600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:112569000-112578000	Weak transcription	Colonic Mucosa	Colon
30	chr10:112569400-112571000	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:112569800-112570800	Genic enhancers	Left Ventricle	heart
32	chr10:112569800-112572400	Weak transcription	Fetal Intestine Large	intestine
33	chr10:112570000-112570400	Genic enhancers	Right Ventricle	heart
34	chr10:112570000-112570400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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