Variant report

Variant	rs12256157
Chromosome Location	chr10:112601573-112601574
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112596969..112605726-chr10:112629736..112633505,15	MCF-7	breast:
2	chr10:112601392..112612171-chr10:112628692..112635814,14	MCF-7	breast:
3	chr10:112598100..112600468-chr10:112601210..112602806,2	K562	blood:
4	chr10:112598046..112602437-chr10:112602473..112607485,6	MCF-7	breast:
5	chr10:112562735..112565358-chr10:112599409..112602252,2	MCF-7	breast:
6	chr10:112595791..112597463-chr10:112601395..112603018,2	K562	blood:
7	chr10:112595142..112598000-chr10:112598857..112603163,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150593	Chromatin interaction
ENSG00000232470	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10787286	1.00[CHB][hapmap]
rs12572941	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2146544	1.00[CHB][hapmap]
rs4917589	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv467455	chr10:112579299-112612471	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv552172	chr10:112579299-112612471	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112588200-112601600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:112591400-112610600	Weak transcription	HSMMtube	muscle
3	chr10:112592800-112604200	Enhancers	Placenta	Placenta
4	chr10:112593200-112608200	Enhancers	Fetal Intestine Small	intestine
5	chr10:112593200-112608400	Enhancers	Fetal Intestine Large	intestine
6	chr10:112593800-112602200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:112594000-112602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:112594000-112607400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:112594000-112607600	Enhancers	Small Intestine	intestine
10	chr10:112594800-112601800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:112595000-112602000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:112595400-112602400	Weak transcription	Thymus	Thymus
13	chr10:112595600-112603000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:112595800-112601600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:112596000-112602000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:112596400-112602200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr10:112597000-112617200	Weak transcription	Psoas Muscle	Psoas
18	chr10:112597400-112605200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:112597400-112614600	Weak transcription	Aorta	Aorta
20	chr10:112597600-112603800	Weak transcription	Lung	lung
21	chr10:112597600-112605400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:112597800-112602200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:112597800-112613400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:112597800-112617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:112598000-112601600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:112598000-112606800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:112598400-112601600	Weak transcription	Primary T cells from cord blood	blood
28	chr10:112598400-112602200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:112598400-112605600	Weak transcription	Fetal Kidney	kidney
30	chr10:112599000-112602200	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:112599200-112607400	Enhancers	Stomach Mucosa	stomach
32	chr10:112599400-112602200	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr10:112599400-112602800	Weak transcription	Fetal Heart	heart
34	chr10:112599400-112607400	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr10:112599600-112601600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:112599600-112603800	Weak transcription	K562	blood
37	chr10:112599600-112613000	Enhancers	Pancreas	Pancrea
38	chr10:112599800-112602200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:112600200-112602400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:112600200-112602400	Enhancers	Primary B cells from peripheral blood	blood
41	chr10:112600200-112602400	Enhancers	Brain Hippocampus Middle	brain
42	chr10:112600200-112603000	Enhancers	Fetal Muscle Trunk	muscle
43	chr10:112600200-112603400	Enhancers	Adipose Nuclei	Adipose
44	chr10:112600400-112602200	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr10:112600400-112602200	Enhancers	Primary B cells from cord blood	blood
46	chr10:112600400-112602600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:112600400-112603400	Enhancers	Colonic Mucosa	Colon
48	chr10:112600400-112603400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:112600400-112607200	Enhancers	Primary T cells fromperipheralblood	blood
50	chr10:112600600-112601600	Weak transcription	H1 Cell Line	embryonic stem cell

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