Variant report

Variant	rs12574920
Chromosome Location	chr11:120686370-120686371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10502240	1.00[CHB][hapmap]
rs10790393	1.00[CHB][hapmap]
rs10790394	1.00[CHB][hapmap]
rs10892593	1.00[CHB][hapmap]
rs10892594	1.00[CHB][hapmap]
rs10892595	1.00[CHB][hapmap]
rs10892596	1.00[CHB][hapmap]
rs10892599	1.00[CHB][hapmap]
rs10892600	1.00[CHB][hapmap]
rs10892601	1.00[CHB][hapmap]
rs10892603	1.00[CHB][hapmap]
rs10892604	1.00[CHB][hapmap]
rs10892605	1.00[CHB][hapmap]
rs10892611	1.00[CHB][hapmap]
rs11217951	1.00[CHB][hapmap]
rs11217955	1.00[CHB][hapmap]
rs11217958	1.00[CHB][hapmap]
rs11217959	1.00[CHB][hapmap]
rs11217962	1.00[CHB][hapmap]
rs11217965	1.00[CHB][hapmap]
rs11217970	1.00[CHB][hapmap]
rs11217972	1.00[CHB][hapmap]
rs11603586	1.00[CHB][hapmap]
rs11607732	1.00[CHB][hapmap]
rs12224951	1.00[CHB][hapmap]
rs12225752	1.00[CHB][hapmap]
rs12360673	1.00[CHB][hapmap]
rs4628679	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120671400-120687400	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120673600-120687800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:120673600-120687800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120674000-120696000	Weak transcription	Fetal Lung	lung
5	chr11:120678800-120688000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:120680200-120695000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:120681200-120687000	Weak transcription	HepG2	liver
8	chr11:120681200-120687800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:120684000-120688000	Weak transcription	Right Atrium	heart
10	chr11:120684000-120707600	Weak transcription	Ovary	ovary
11	chr11:120685400-120687600	Enhancers	Colonic Mucosa	Colon
12	chr11:120686000-120686800	Enhancers	Placenta	Placenta
13	chr11:120686000-120687000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:120686000-120688600	Enhancers	Adipose Nuclei	Adipose
15	chr11:120686200-120686400	Flanking Active TSS	Fetal Kidney	kidney
16	chr11:120686200-120687000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:120686200-120687600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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