Variant report

Variant	rs12575459
Chromosome Location	chr11:58162382-58162383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12803463	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34193069	1.00[AFR][1000 genomes]
rs4939206	0.88[ASN][1000 genomes]
rs71486413	0.93[ASN][1000 genomes]
rs71486420	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1037213	chr11:58142913-58178810	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58156600-58162800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:58158200-58162800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58158800-58162400	Enhancers	NHLF	lung
4	chr11:58159000-58162400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:58159600-58162400	Enhancers	HMEC	breast
6	chr11:58159800-58162800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:58159800-58163800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:58160000-58162400	Enhancers	NHEK	skin
9	chr11:58160200-58162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:58160200-58162600	Enhancers	HUVEC	blood vessel
11	chr11:58160200-58163800	Enhancers	HSMM	muscle
12	chr11:58162000-58163200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:58162200-58162600	Weak transcription	HSMMtube	muscle
14	chr11:58162200-58163000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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