Variant report

Variant	rs71486420
Chromosome Location	chr11:58292307-58292308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58284806..58289208-chr11:58289424..58292690,3	K562	blood:
2	chr11:58287109..58289381-chr11:58290390..58293298,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12575459	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12803463	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34193069	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35180622	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58290400-58294400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:58290400-58295400	Weak transcription	Right Ventricle	heart
3	chr11:58291200-58292600	Flanking Active TSS	GM12878-XiMat	blood
4	chr11:58291200-58293400	Enhancers	Fetal Thymus	thymus
5	chr11:58291400-58292600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:58291400-58293000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:58291400-58293400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:58291400-58293400	Flanking Active TSS	Dnd41	blood
9	chr11:58291600-58292400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr11:58291600-58292400	Enhancers	Liver	Liver
11	chr11:58291600-58292400	Enhancers	Fetal Stomach	stomach
12	chr11:58291600-58292800	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr11:58291600-58293200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:58291600-58293800	Enhancers	Thymus	Thymus
15	chr11:58291600-58293800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr11:58291600-58294000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:58291800-58292400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr11:58291800-58292600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr11:58291800-58292600	Enhancers	Osteobl	bone
20	chr11:58291800-58292800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:58291800-58292800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr11:58291800-58292800	Enhancers	Fetal Heart	heart
23	chr11:58291800-58292800	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr11:58291800-58293000	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr11:58291800-58293000	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr11:58291800-58293000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:58291800-58293200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr11:58291800-58294400	Weak transcription	Psoas Muscle	Psoas
29	chr11:58291800-58297200	Weak transcription	Pancreas	Pancrea
30	chr11:58292000-58292400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr11:58292000-58292600	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr11:58292000-58292600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:58292000-58292800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr11:58292000-58293000	Enhancers	Duodenum Mucosa	Duodenum
35	chr11:58292000-58293400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr11:58292000-58294800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:58292000-58295000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:58292000-58295000	Weak transcription	Lung	lung
39	chr11:58292000-58295000	Weak transcription	Spleen	Spleen
40	chr11:58292000-58295200	Weak transcription	Small Intestine	intestine
41	chr11:58292000-58295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:58292000-58297200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:58292000-58299200	Weak transcription	Esophagus	oesophagus
44	chr11:58292000-58299400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:58292000-58314000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:58292200-58292400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
49	chr11:58292200-58292600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:58292200-58292600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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