Variant report

Variant	rs12575698
Chromosome Location	chr11:57786017-57786018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11229185	0.91[ASN][1000 genomes]
rs11570238	1.00[CHB][hapmap]
rs12291403	0.88[ASN][1000 genomes]
rs12417244	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12417258	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12417892	0.91[ASN][1000 genomes]
rs12418547	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12419044	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12419348	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12419399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419513	0.80[ASN][1000 genomes]
rs12420912	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1397277	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1868882	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2441965	1.00[CEU][hapmap]
rs2441968	0.82[CHD][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap]
rs2441976	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs2441983	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs2441984	0.84[JPT][hapmap]
rs2443448	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs2513706	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2513724	1.00[CEU][hapmap];0.83[CHD][hapmap];0.83[TSI][hapmap]
rs2514182	0.83[JPT][hapmap]
rs2514190	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2514192	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs2514207	0.82[CHD][hapmap];0.83[JPT][hapmap]
rs2514209	0.82[CHD][hapmap];0.82[JPT][hapmap];0.80[LWK][hapmap]
rs3974333	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7120194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs986053	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv328	chr11:57744748-57789940	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv975361	chr11:57761225-57786621	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57785800-57791400	Weak transcription	Pancreas	Pancrea
2	chr11:57786000-57787200	Weak transcription	Left Ventricle	heart

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