Variant report

Variant	rs1868882
Chromosome Location	chr11:57835508-57835509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10792136	0.89[JPT][hapmap]
rs12419399	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12575698	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1447170	0.89[JPT][hapmap];0.95[MEX][hapmap]
rs2441962	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2441965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2441968	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap]
rs2441976	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2441983	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2441984	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2443448	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2513706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2513724	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514182	0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2514190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2514192	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2514193	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2514194	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2514195	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2514207	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs2514209	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap]
rs3018838	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3974333	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7120194	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7128490	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7128761	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs986053	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57826400-57838000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:57826400-57845200	Weak transcription	Pancreas	Pancrea
3	chr11:57830000-57836400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:57834400-57837800	Weak transcription	HepG2	liver
5	chr11:57834800-57835600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:57835000-57835600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:57835200-57835600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:57835400-57839200	Weak transcription	Right Ventricle	heart

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