Variant report

Variant	rs12576901
Chromosome Location	chr11:75310827-75310828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:75310616-75310903	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr11:75310647-75310832	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr11:75310606-75310866	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr11:75310720-75310870	WERI-Rb-1	eye:	n/a	n/a
5	CTCF	chr11:75310740-75310890	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75272209..75273815-chr11:75308377..75311423,3	MCF-7	breast:
2	chr11:75310100..75313043-chr11:75343233..75344742,2	MCF-7	breast:

Variant related genes	Relation type
MAP6	TF binding region
ENSG00000255434	TF binding region
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12577652	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12577671	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs58567299	0.88[ASN][1000 genomes]
rs59533422	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73488413	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75295600-75314200	Weak transcription	Lung	lung
3	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:75296600-75321000	Weak transcription	Ovary	ovary
5	chr11:75301600-75313800	Weak transcription	Fetal Lung	lung
6	chr11:75302800-75312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
8	chr11:75305600-75316000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:75305800-75313400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:75305800-75316000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:75306000-75326200	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:75306000-75326200	Weak transcription	Brain Substantia Nigra	brain
14	chr11:75306200-75312600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:75306400-75312600	Weak transcription	Fetal Stomach	stomach
16	chr11:75306400-75313400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:75306400-75323600	Weak transcription	Spleen	Spleen
18	chr11:75306600-75324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:75307000-75316000	Weak transcription	Brain Anterior Caudate	brain
20	chr11:75309200-75314200	Weak transcription	Fetal Brain Male	brain
21	chr11:75309200-75314200	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:75309200-75316600	Weak transcription	Brain Germinal Matrix	brain
23	chr11:75309200-75320800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:75309400-75311000	Weak transcription	Fetal Heart	heart
25	chr11:75309600-75312600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:75309600-75319400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:75309800-75314200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:75309800-75320200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:75310000-75311400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:75310200-75313000	Weak transcription	Fetal Brain Female	brain
31	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
32	chr11:75310800-75311000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:75310800-75311000	Enhancers	Right Atrium	heart
34	chr11:75310800-75311200	Enhancers	HMEC	breast
35	chr11:75310800-75311200	Enhancers	NHEK	skin
36	chr11:75310800-75316000	Weak transcription	Fetal Intestine Large	intestine

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