Variant report

Variant	rs12577652
Chromosome Location	chr11:75318664-75318665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75307676..75310084-chr11:75318622..75321898,3	MCF-7	breast:
2	chr11:75314295..75316216-chr11:75317746..75319793,2	K562	blood:
3	chr11:75318249..75321845-chr11:75322154..75325237,3	MCF-7	breast:
4	chr11:75312291..75314433-chr11:75317932..75319795,2	MCF-7	breast:
5	chr11:75318041..75319939-chr11:75382650..75385603,2	MCF-7	breast:
6	chr11:75307708..75310392-chr11:75318661..75320948,2	K562	blood:
7	chr11:75306773..75310392-chr11:75318661..75320974,3	K562	blood:

Variant related genes	Relation type
ENSG00000255434	Chromatin interaction
ENSG00000171533	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10160335	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs10160495	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs11236475	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11236480	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12281880	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12282340	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12294083	0.86[JPT][hapmap]
rs12574289	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12574551	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12576145	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12576629	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12576635	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12576901	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12577202	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12577671	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12577817	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs17134189	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs17134210	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17134231	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs17134235	0.89[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs2009247	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3862804	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4544029	0.80[ASN][1000 genomes]
rs57777945	0.80[ASN][1000 genomes]
rs58567299	0.92[ASN][1000 genomes]
rs59533422	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61895124	0.80[ASN][1000 genomes]
rs61895137	0.80[ASN][1000 genomes]
rs61895139	0.80[ASN][1000 genomes]
rs61895140	0.80[ASN][1000 genomes]
rs61895141	0.80[ASN][1000 genomes]
rs61895142	0.83[ASN][1000 genomes]
rs61895143	0.80[ASN][1000 genomes]
rs61897960	0.80[ASN][1000 genomes]
rs73488413	1.00[ASN][1000 genomes]
rs73488490	0.80[ASN][1000 genomes]
rs73488497	0.80[ASN][1000 genomes]
rs7482921	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	esv2652895	chr11:75318665-75318667	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2125118	chr11:75318665-75318668	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75296600-75321000	Weak transcription	Ovary	ovary
3	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
4	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:75306000-75326200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:75306000-75326200	Weak transcription	Brain Substantia Nigra	brain
7	chr11:75306400-75323600	Weak transcription	Spleen	Spleen
8	chr11:75306600-75324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:75309200-75320800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:75309600-75319400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:75309800-75320200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
13	chr11:75311600-75324000	Weak transcription	Right Atrium	heart
14	chr11:75312600-75319600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:75313800-75326000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:75314000-75328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:75315200-75319600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:75315200-75324400	Weak transcription	Right Ventricle	heart
19	chr11:75315600-75319000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:75316000-75319200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:75316000-75319200	Strong transcription	Brain Anterior Caudate	brain
22	chr11:75316000-75319400	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr11:75316000-75319600	Strong transcription	Fetal Stomach	stomach
24	chr11:75316000-75326200	Weak transcription	Fetal Brain Male	brain
25	chr11:75316200-75319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:75316400-75319200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:75316400-75319200	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:75316400-75319600	Strong transcription	Fetal Brain Female	brain
29	chr11:75317600-75324000	Weak transcription	Lung	lung
30	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:75318000-75326000	Weak transcription	Brain Germinal Matrix	brain
32	chr11:75318200-75319600	Weak transcription	Fetal Lung	lung
33	chr11:75318400-75326400	Weak transcription	Brain Angular Gyrus	brain

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