Variant report

Variant	rs3862804
Chromosome Location	chr11:75362528-75362529
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75362323..75365214-chr11:75375705..75377919,2	K562	blood:
2	chr11:75351036..75353182-chr11:75360194..75362625,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10160335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279672	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577652	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12577671	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12577817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17134189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134192	1.00[EUR][1000 genomes]
rs17134210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894210	0.88[EUR][1000 genomes]
rs2009247	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57777945	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58567299	0.87[ASN][1000 genomes]
rs59533422	0.87[ASN][1000 genomes]
rs60312531	0.83[EUR][1000 genomes]
rs61895119	0.88[EUR][1000 genomes]
rs61895120	0.88[EUR][1000 genomes]
rs61895121	0.88[EUR][1000 genomes]
rs61895122	0.91[EUR][1000 genomes]
rs61895123	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895125	1.00[EUR][1000 genomes]
rs61895126	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895128	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895131	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895132	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895133	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895134	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895141	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895142	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895143	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897960	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111913	0.89[EUR][1000 genomes]
rs7128429	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73488413	0.80[ASN][1000 genomes]
rs73488490	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488497	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502466	0.84[EUR][1000 genomes]
rs7482921	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75351600-75366600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:75353800-75366400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75355000-75362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:75355000-75366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:75355200-75366400	Weak transcription	Fetal Brain Male	brain
6	chr11:75357000-75365200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:75359000-75364200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:75361000-75363000	Enhancers	Fetal Heart	heart
9	chr11:75362000-75362800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:75362000-75363600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:75362000-75366400	Weak transcription	Fetal Brain Female	brain
12	chr11:75362200-75363000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:75362200-75363200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:75362200-75368600	Enhancers	HSMMtube	muscle
15	chr11:75362400-75363200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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