Variant report

Variant	rs12279672
Chromosome Location	chr11:75374046-75374047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10160335	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10160495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236475	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12282340	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12294083	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574289	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574551	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12576145	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12576629	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576635	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12577202	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12577817	0.96[ASN][1000 genomes]
rs17134189	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17134192	0.97[EUR][1000 genomes]
rs17134210	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17134231	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17134235	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894210	0.85[EUR][1000 genomes]
rs2009247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862804	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4544029	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57777945	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58567299	0.85[ASN][1000 genomes]
rs59533422	0.85[ASN][1000 genomes]
rs60312531	0.80[EUR][1000 genomes]
rs61895119	0.85[EUR][1000 genomes]
rs61895120	0.85[EUR][1000 genomes]
rs61895121	0.85[EUR][1000 genomes]
rs61895122	0.88[EUR][1000 genomes]
rs61895123	0.96[ASN][1000 genomes]
rs61895124	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895125	0.97[EUR][1000 genomes]
rs61895126	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895128	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895131	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895132	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895133	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895134	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895137	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895139	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895140	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895141	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895142	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61895143	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61897960	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111913	0.92[EUR][1000 genomes]
rs7128429	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73488490	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73488497	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73502466	0.86[EUR][1000 genomes]
rs7482921	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:75367200-75374200	Weak transcription	Fetal Brain Male	brain
3	chr11:75367200-75376400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:75367400-75377800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75367600-75374400	Weak transcription	Fetal Brain Female	brain
6	chr11:75367600-75376400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:75367600-75376600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:75367600-75378200	Weak transcription	Aorta	Aorta
9	chr11:75367800-75374200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:75367800-75374200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:75367800-75374600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:75367800-75377800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:75369000-75374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:75373000-75374600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:75373200-75374400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:75373400-75374600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:75373400-75374600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:75373600-75374600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:75373600-75375400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr11:75373600-75377400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:75373800-75374200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:75373800-75375000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:75373800-75375000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr11:75374000-75374400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:75374000-75374600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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