Variant report

Variant	rs12577817
Chromosome Location	chr11:75366562-75366563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75363830..75367510-chr11:75368962..75372910,4	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10160335	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10160495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11236475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11236480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12279672	0.96[ASN][1000 genomes]
rs12281880	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12282340	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12294083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12574289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12574551	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12576145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12576629	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12576635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12577202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12577652	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs12577671	0.82[CHB][hapmap]
rs17134189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17134210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17134231	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17134235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2009247	0.84[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs3862804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4544029	0.99[ASN][1000 genomes]
rs57777945	0.99[ASN][1000 genomes]
rs58567299	0.86[ASN][1000 genomes]
rs58745525	1.00[AMR][1000 genomes]
rs59533422	0.86[ASN][1000 genomes]
rs61609954	1.00[AMR][1000 genomes]
rs61895123	0.98[ASN][1000 genomes]
rs61895124	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs61895126	0.98[ASN][1000 genomes]
rs61895128	0.98[ASN][1000 genomes]
rs61895131	0.98[ASN][1000 genomes]
rs61895132	0.98[ASN][1000 genomes]
rs61895133	0.98[ASN][1000 genomes]
rs61895134	0.98[ASN][1000 genomes]
rs61895137	0.99[ASN][1000 genomes]
rs61895139	0.99[ASN][1000 genomes]
rs61895140	0.99[ASN][1000 genomes]
rs61895141	0.99[ASN][1000 genomes]
rs61895142	0.95[ASN][1000 genomes]
rs61895143	0.99[ASN][1000 genomes]
rs61897960	0.99[ASN][1000 genomes]
rs7128429	0.98[ASN][1000 genomes]
rs73488490	0.99[ASN][1000 genomes]
rs73488497	0.99[ASN][1000 genomes]
rs73494855	1.00[AMR][1000 genomes]
rs73494864	1.00[AMR][1000 genomes]
rs73505019	1.00[AMR][1000 genomes]
rs73505021	1.00[AMR][1000 genomes]
rs7482921	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75351600-75366600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:75362200-75368600	Enhancers	HSMMtube	muscle
3	chr11:75363000-75366600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:75363200-75367600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:75363400-75366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:75364000-75367600	Enhancers	Osteobl	bone
7	chr11:75364000-75368000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:75364000-75368000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:75364000-75368000	Enhancers	HMEC	breast
10	chr11:75364200-75367800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:75364200-75367800	Enhancers	HSMM	muscle
12	chr11:75364200-75368200	Enhancers	NHEK	skin
13	chr11:75364400-75366600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:75364400-75366600	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:75364400-75366800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:75364400-75368200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:75364400-75368200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:75364600-75367000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:75364600-75368000	Enhancers	Fetal Heart	heart
20	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:75365200-75367600	Enhancers	NH-A	brain
22	chr11:75365200-75368000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:75365400-75368000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:75365400-75368600	Enhancers	Fetal Muscle Leg	muscle
25	chr11:75366000-75366800	Enhancers	GM12878-XiMat	blood
26	chr11:75366000-75367800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:75366000-75367800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr11:75366200-75367200	Weak transcription	NHDF-Ad	bronchial
29	chr11:75366400-75366800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:75366400-75367000	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:75366400-75367200	Enhancers	Brain Germinal Matrix	brain
32	chr11:75366400-75367200	Enhancers	Fetal Brain Male	brain
33	chr11:75366400-75367400	Enhancers	Placenta	Placenta
34	chr11:75366400-75367400	Enhancers	Stomach Smooth Muscle	stomach
35	chr11:75366400-75367600	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr11:75366400-75367600	Enhancers	Fetal Brain Female	brain
37	chr11:75366400-75367800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:75366400-75367800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:75366400-75367800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr11:75366400-75367800	Enhancers	Left Ventricle	heart
41	chr11:75366400-75368000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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