Variant report

Variant	rs12574551
Chromosome Location	chr11:75341062-75341063
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75324179..75326709-chr11:75339433..75341583,3	K562	blood:
2	chr11:75340982..75343512-chr11:75355129..75357190,2	K562	blood:
3	chr11:75332696..75337381-chr11:75337684..75342464,5	K562	blood:
4	chr11:75324396..75326709-chr11:75339433..75341143,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10160335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10160495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12279672	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12282340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12294083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576629	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577652	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12577671	0.82[CHB][hapmap]
rs12577817	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17134189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17134235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894210	0.88[EUR][1000 genomes]
rs2009247	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4544029	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57777945	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58567299	0.86[ASN][1000 genomes]
rs59533422	0.86[ASN][1000 genomes]
rs60312531	0.83[EUR][1000 genomes]
rs61895119	0.88[EUR][1000 genomes]
rs61895120	0.88[EUR][1000 genomes]
rs61895121	0.88[EUR][1000 genomes]
rs61895122	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61895123	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895125	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895131	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895132	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895137	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895140	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895141	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895142	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61895143	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61897960	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111913	0.89[EUR][1000 genomes]
rs7128429	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488490	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73488497	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73502466	0.84[EUR][1000 genomes]
rs7482921	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75326800-75343600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75330000-75350800	Weak transcription	Lung	lung
5	chr11:75330200-75356200	Weak transcription	Aorta	Aorta
6	chr11:75335400-75343000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:75335400-75346800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:75336000-75343200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:75338000-75344000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:75338000-75346000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:75338400-75341200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:75338600-75342200	Weak transcription	Fetal Brain Male	brain
13	chr11:75338600-75343400	Weak transcription	Fetal Brain Female	brain
14	chr11:75338800-75341200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:75338800-75346400	Weak transcription	Brain Anterior Caudate	brain
16	chr11:75339000-75344800	Weak transcription	Fetal Heart	heart
17	chr11:75339000-75350400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:75339200-75346400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:75339200-75346600	Weak transcription	Spleen	Spleen
20	chr11:75339400-75346200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:75339600-75344200	Weak transcription	Fetal Stomach	stomach
22	chr11:75339600-75344600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:75339600-75345600	Weak transcription	Ovary	ovary
24	chr11:75339800-75342400	Weak transcription	HSMMtube	muscle
25	chr11:75339800-75343800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:75339800-75344800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:75339800-75344800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:75340000-75344400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:75340000-75344400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:75340000-75344400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:75340000-75344600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:75340000-75344600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:75340000-75352600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:75340200-75341600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:75340200-75342400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:75340200-75342600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:75340600-75341200	Enhancers	Fetal Lung	lung
38	chr11:75340800-75341200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:75340800-75341200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:75341000-75343600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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