Variant report

Variant	rs1894210
Chromosome Location	chr11:75303226-75303227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75300955..75303258-chr11:75311375..75313698,2	K562	blood:
2	chr11:75301994..75305996-chr11:75306128..75308913,4	MCF-7	breast:
3	chr11:75286806..75288812-chr11:75301623..75303290,2	MCF-7	breast:
4	chr11:75290774..75292517-chr11:75302015..75303916,2	K562	blood:
5	chr11:75302403..75305130-chr11:75308295..75310796,2	K562	blood:
6	chr11:75272932..75274966-chr11:75302540..75305496,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171533	Chromatin interaction
ENSG00000255434	Chromatin interaction
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10160335	0.85[EUR][1000 genomes]
rs10160495	0.85[EUR][1000 genomes]
rs11236475	0.88[EUR][1000 genomes]
rs11236480	0.85[EUR][1000 genomes]
rs12279672	0.85[EUR][1000 genomes]
rs12281880	0.85[EUR][1000 genomes]
rs12282340	0.85[EUR][1000 genomes]
rs12294083	0.88[EUR][1000 genomes]
rs12574289	0.85[EUR][1000 genomes]
rs12574551	0.88[EUR][1000 genomes]
rs12576145	0.88[EUR][1000 genomes]
rs12576629	0.88[EUR][1000 genomes]
rs12576635	0.88[EUR][1000 genomes]
rs12577202	0.85[EUR][1000 genomes]
rs17134189	0.88[EUR][1000 genomes]
rs17134192	0.88[EUR][1000 genomes]
rs17134210	0.88[EUR][1000 genomes]
rs17134231	0.85[EUR][1000 genomes]
rs17134235	0.85[EUR][1000 genomes]
rs2009247	0.85[EUR][1000 genomes]
rs2040333	0.83[ASN][1000 genomes]
rs3862804	0.88[EUR][1000 genomes]
rs4544029	0.88[EUR][1000 genomes]
rs57777945	0.88[EUR][1000 genomes]
rs60312531	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895093	0.83[ASN][1000 genomes]
rs61895094	0.83[ASN][1000 genomes]
rs61895095	0.83[ASN][1000 genomes]
rs61895119	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61895120	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61895121	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61895122	0.91[EUR][1000 genomes]
rs61895123	0.81[EUR][1000 genomes]
rs61895124	0.88[EUR][1000 genomes]
rs61895125	0.88[EUR][1000 genomes]
rs61895126	0.88[EUR][1000 genomes]
rs61895128	0.88[EUR][1000 genomes]
rs61895131	0.88[EUR][1000 genomes]
rs61895132	0.88[EUR][1000 genomes]
rs61895133	0.88[EUR][1000 genomes]
rs61895134	0.88[EUR][1000 genomes]
rs61895137	0.88[EUR][1000 genomes]
rs61895139	0.88[EUR][1000 genomes]
rs61895140	0.88[EUR][1000 genomes]
rs61895141	0.85[EUR][1000 genomes]
rs61895142	0.85[EUR][1000 genomes]
rs61895143	0.85[EUR][1000 genomes]
rs61897960	0.85[EUR][1000 genomes]
rs7128429	0.88[EUR][1000 genomes]
rs73488490	0.85[EUR][1000 genomes]
rs73488497	0.85[EUR][1000 genomes]
rs7482921	0.83[EUR][1000 genomes]
rs9783396	0.83[ASN][1000 genomes]
rs9783403	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75294600-75303400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
3	chr11:75295600-75303800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:75295600-75304000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:75295600-75310800	Weak transcription	Right Atrium	heart
6	chr11:75295600-75314200	Weak transcription	Lung	lung
7	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:75296000-75304000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:75296200-75304200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:75296600-75305800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:75296600-75321000	Weak transcription	Ovary	ovary
12	chr11:75296800-75303400	Weak transcription	HUVEC	blood vessel
13	chr11:75297000-75305200	Weak transcription	Spleen	Spleen
14	chr11:75297800-75303600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:75299000-75304000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:75299000-75304600	Weak transcription	Fetal Brain Female	brain
17	chr11:75299600-75304400	Weak transcription	Brain Germinal Matrix	brain
18	chr11:75299800-75303800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:75300400-75304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:75300600-75303600	Weak transcription	Fetal Intestine Small	intestine
21	chr11:75300600-75303800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:75301600-75303400	Enhancers	K562	blood
23	chr11:75301600-75304000	Weak transcription	Fetal Stomach	stomach
24	chr11:75301600-75313800	Weak transcription	Fetal Lung	lung
25	chr11:75302200-75303400	Enhancers	Fetal Muscle Trunk	muscle
26	chr11:75302200-75305400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr11:75302200-75306800	Enhancers	Fetal Muscle Leg	muscle
28	chr11:75302400-75304800	Enhancers	HSMM	muscle
29	chr11:75302400-75305000	Enhancers	Pancreas	Pancrea
30	chr11:75302400-75305200	Enhancers	HSMMtube	muscle
31	chr11:75302600-75304200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr11:75302800-75312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:75303000-75303400	Weak transcription	Fetal Heart	heart
34	chr11:75303000-75303600	Enhancers	Fetal Thymus	thymus
35	chr11:75303000-75303800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:75303200-75303400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:75303200-75303400	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr11:75303200-75303400	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr11:75303200-75303800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:75303200-75304000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:75303200-75304000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:75303200-75304200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:75303200-75305400	Enhancers	Fetal Intestine Large	intestine

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