Variant report

Variant	rs61895119
Chromosome Location	chr11:75314296-75314297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr11:75313877-75315975	SK-N-SH	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75303810..75306638-chr11:75313852..75316089,2	MCF-7	breast:
2	chr11:75110440..75111997-chr11:75313123..75315557,2	MCF-7	breast:
3	chr11:75312291..75314433-chr11:75317932..75319795,2	MCF-7	breast:
4	chr11:75314295..75316216-chr11:75317746..75319793,2	K562	blood:
5	chr11:75307063..75310368-chr11:75311136..75315425,4	K562	blood:
6	chr11:75301166..75302882-chr11:75313471..75315266,2	K562	blood:

No data

Variant related genes	Relation type
MAP6	TF binding region
ENSG00000255434	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000171533	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10160335	0.85[EUR][1000 genomes]
rs10160495	0.85[EUR][1000 genomes]
rs11236475	0.88[EUR][1000 genomes]
rs11236480	0.85[EUR][1000 genomes]
rs12279672	0.85[EUR][1000 genomes]
rs12281880	0.85[EUR][1000 genomes]
rs12282340	0.85[EUR][1000 genomes]
rs12294083	0.88[EUR][1000 genomes]
rs12574289	0.85[EUR][1000 genomes]
rs12574551	0.88[EUR][1000 genomes]
rs12576145	0.88[EUR][1000 genomes]
rs12576629	0.88[EUR][1000 genomes]
rs12576635	0.88[EUR][1000 genomes]
rs12577202	0.85[EUR][1000 genomes]
rs17134189	0.88[EUR][1000 genomes]
rs17134192	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17134210	0.88[EUR][1000 genomes]
rs17134231	0.85[EUR][1000 genomes]
rs17134235	0.85[EUR][1000 genomes]
rs1894210	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2009247	0.85[EUR][1000 genomes]
rs3862804	0.88[EUR][1000 genomes]
rs4544029	0.88[EUR][1000 genomes]
rs57777945	0.88[EUR][1000 genomes]
rs60312531	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61895120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895122	0.91[EUR][1000 genomes]
rs61895123	0.81[EUR][1000 genomes]
rs61895124	0.88[EUR][1000 genomes]
rs61895125	0.88[EUR][1000 genomes]
rs61895126	0.88[EUR][1000 genomes]
rs61895128	0.88[EUR][1000 genomes]
rs61895131	0.88[EUR][1000 genomes]
rs61895132	0.88[EUR][1000 genomes]
rs61895133	0.88[EUR][1000 genomes]
rs61895134	0.88[EUR][1000 genomes]
rs61895137	0.88[EUR][1000 genomes]
rs61895139	0.88[EUR][1000 genomes]
rs61895140	0.88[EUR][1000 genomes]
rs61895141	0.85[EUR][1000 genomes]
rs61895142	0.85[EUR][1000 genomes]
rs61895143	0.85[EUR][1000 genomes]
rs61897960	0.85[EUR][1000 genomes]
rs7128429	0.88[EUR][1000 genomes]
rs73488490	0.85[EUR][1000 genomes]
rs73488497	0.85[EUR][1000 genomes]
rs7482921	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75296600-75321000	Weak transcription	Ovary	ovary
4	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
5	chr11:75305600-75316000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:75305800-75316000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:75306000-75326200	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:75306000-75326200	Weak transcription	Brain Substantia Nigra	brain
10	chr11:75306400-75323600	Weak transcription	Spleen	Spleen
11	chr11:75306600-75324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:75307000-75316000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:75309200-75316600	Weak transcription	Brain Germinal Matrix	brain
14	chr11:75309200-75320800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:75309600-75319400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:75309800-75320200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
18	chr11:75310800-75316000	Weak transcription	Fetal Intestine Large	intestine
19	chr11:75311600-75324000	Weak transcription	Right Atrium	heart
20	chr11:75312600-75314400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:75312600-75319600	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:75313400-75314800	Enhancers	Fetal Muscle Trunk	muscle
23	chr11:75313400-75316200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:75313600-75314400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:75313600-75315200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:75313600-75315600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:75313800-75315000	Enhancers	HUVEC	blood vessel
28	chr11:75313800-75315000	Enhancers	NH-A	brain
29	chr11:75313800-75315200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:75313800-75315400	Enhancers	Fetal Lung	lung
31	chr11:75313800-75315600	Enhancers	HMEC	breast
32	chr11:75313800-75315600	Enhancers	NHEK	skin
33	chr11:75313800-75316200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr11:75313800-75316400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:75313800-75326000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:75314000-75314400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr11:75314000-75314400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr11:75314000-75314400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr11:75314000-75314600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:75314000-75314600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:75314000-75314600	Enhancers	HSMMtube	muscle
42	chr11:75314000-75314800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:75314000-75315000	Enhancers	Fetal Stomach	stomach
44	chr11:75314000-75315200	Enhancers	NHDF-Ad	bronchial
45	chr11:75314000-75315400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:75314000-75315400	Genic enhancers	Fetal Brain Female	brain
47	chr11:75314000-75315400	Enhancers	Fetal Heart	heart
48	chr11:75314000-75315400	Enhancers	NHLF	lung
49	chr11:75314000-75315600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:75314000-75315600	Enhancers	HSMM	muscle

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