Variant report

Variant	rs12282340
Chromosome Location	chr11:75370520-75370521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75368854..75370589-chr11:75380930..75383566,2	K562	blood:
2	chr11:75364181..75366383-chr11:75370266..75372144,2	MCF-7	breast:
3	chr11:75286949..75288532-chr11:75369547..75372456,2	MCF-7	breast:
4	chr11:75369616..75372196-chr11:75374658..75377795,3	MCF-7	breast:
5	chr11:75363830..75367510-chr11:75368962..75372910,4	K562	blood:
6	chr11:75369962..75371623-chr11:75376445..75378438,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10160335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279672	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577652	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12577671	0.82[CHB][hapmap]
rs12577817	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17134189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134192	0.97[EUR][1000 genomes]
rs17134210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894210	0.85[EUR][1000 genomes]
rs2009247	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544029	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57777945	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58567299	0.87[ASN][1000 genomes]
rs59533422	0.87[ASN][1000 genomes]
rs60312531	0.80[EUR][1000 genomes]
rs61895119	0.85[EUR][1000 genomes]
rs61895120	0.85[EUR][1000 genomes]
rs61895121	0.85[EUR][1000 genomes]
rs61895122	0.88[EUR][1000 genomes]
rs61895123	0.99[ASN][1000 genomes]
rs61895124	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895125	0.97[EUR][1000 genomes]
rs61895126	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895128	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895131	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895132	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895133	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895134	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895137	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895139	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895140	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895141	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895142	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895143	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111913	0.92[EUR][1000 genomes]
rs7128429	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73488413	0.80[ASN][1000 genomes]
rs73488490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488497	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502466	0.86[EUR][1000 genomes]
rs7482921	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:75367200-75374200	Weak transcription	Fetal Brain Male	brain
3	chr11:75367200-75376400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:75367400-75377800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75367600-75371000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:75367600-75371400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:75367600-75374400	Weak transcription	Fetal Brain Female	brain
8	chr11:75367600-75376400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:75367600-75376600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:75367600-75378200	Weak transcription	Aorta	Aorta
11	chr11:75367800-75373200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:75367800-75374200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:75367800-75374200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:75367800-75374600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:75367800-75377800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:75368000-75373400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:75369000-75374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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