Variant report

Variant	rs73502466
Chromosome Location	chr11:75433667-75433668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75427256..75429895-chr11:75431498..75434297,2	K562	blood:

Variant related genes	Relation type
ENSG00000166391	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10160335	0.86[EUR][1000 genomes]
rs10160495	0.86[EUR][1000 genomes]
rs11236475	0.84[EUR][1000 genomes]
rs11236480	0.86[EUR][1000 genomes]
rs12279672	0.86[EUR][1000 genomes]
rs12281880	0.86[EUR][1000 genomes]
rs12282340	0.86[EUR][1000 genomes]
rs12294083	0.84[EUR][1000 genomes]
rs12574289	0.86[EUR][1000 genomes]
rs12574551	0.84[EUR][1000 genomes]
rs12576145	0.84[EUR][1000 genomes]
rs12576629	0.84[EUR][1000 genomes]
rs12576635	0.84[EUR][1000 genomes]
rs12577202	0.86[EUR][1000 genomes]
rs17134189	0.84[EUR][1000 genomes]
rs17134192	0.84[EUR][1000 genomes]
rs17134210	0.84[EUR][1000 genomes]
rs17134231	0.86[EUR][1000 genomes]
rs17134235	0.86[EUR][1000 genomes]
rs2009247	0.86[EUR][1000 genomes]
rs3862804	0.84[EUR][1000 genomes]
rs4544029	0.84[EUR][1000 genomes]
rs57777945	0.84[EUR][1000 genomes]
rs61895124	0.84[EUR][1000 genomes]
rs61895125	0.84[EUR][1000 genomes]
rs61895126	0.84[EUR][1000 genomes]
rs61895128	0.84[EUR][1000 genomes]
rs61895131	0.84[EUR][1000 genomes]
rs61895132	0.84[EUR][1000 genomes]
rs61895133	0.84[EUR][1000 genomes]
rs61895134	0.84[EUR][1000 genomes]
rs61895137	0.84[EUR][1000 genomes]
rs61895139	0.84[EUR][1000 genomes]
rs61895140	0.84[EUR][1000 genomes]
rs61895141	0.86[EUR][1000 genomes]
rs61895142	0.86[EUR][1000 genomes]
rs61895143	0.86[EUR][1000 genomes]
rs61897960	0.86[EUR][1000 genomes]
rs7111913	0.95[EUR][1000 genomes]
rs7128429	0.84[EUR][1000 genomes]
rs73488490	0.86[EUR][1000 genomes]
rs73488497	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75429600-75439600	Weak transcription	Fetal Stomach	stomach
2	chr11:75429800-75436800	Weak transcription	Right Atrium	heart
3	chr11:75430200-75436800	Weak transcription	Right Ventricle	heart
4	chr11:75430400-75434800	Weak transcription	Fetal Heart	heart
5	chr11:75430600-75433800	Weak transcription	GM12878-XiMat	blood
6	chr11:75431000-75439800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:75431200-75434000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
8	chr11:75431200-75436800	Weak transcription	Left Ventricle	heart
9	chr11:75431200-75437000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:75432600-75433800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:75432600-75433800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:75432600-75434000	Enhancers	Adipose Nuclei	Adipose
13	chr11:75432600-75434000	Flanking Active TSS	Liver	Liver
14	chr11:75432600-75434000	Flanking Active TSS	HepG2	liver
15	chr11:75432600-75435200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:75432800-75433800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:75432800-75433800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr11:75432800-75434000	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr11:75432800-75434000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr11:75432800-75434000	Enhancers	Fetal Thymus	thymus
21	chr11:75433000-75433800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:75433200-75433800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:75433200-75433800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:75433200-75434800	Enhancers	Colonic Mucosa	Colon
25	chr11:75433200-75443200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:75433400-75433800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:75433600-75433800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:75433600-75433800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:75433600-75433800	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
30	chr11:75433600-75433800	Enhancers	HMEC	breast
31	chr11:75433600-75434000	Flanking Active TSS	Spleen	Spleen
32	chr11:75433600-75435000	Enhancers	Fetal Intestine Large	intestine
33	chr11:75433600-75435200	Strong transcription	Sigmoid Colon	Sigmoid Colon

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