Variant report

Variant	rs12574289
Chromosome Location	chr11:75364314-75364315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75363830..75367510-chr11:75368962..75372910,4	K562	blood:
2	chr11:75364181..75366383-chr11:75370266..75372144,2	MCF-7	breast:
3	chr11:75349737..75352508-chr11:75363193..75364907,2	MCF-7	breast:
4	chr11:75358657..75360582-chr11:75362750..75364712,2	MCF-7	breast:
5	chr11:75362323..75365214-chr11:75375705..75377919,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10160335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279672	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577652	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12577671	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12577817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17134189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134192	0.97[EUR][1000 genomes]
rs17134210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894210	0.85[EUR][1000 genomes]
rs2009247	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544029	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57777945	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58567299	0.87[ASN][1000 genomes]
rs59533422	0.87[ASN][1000 genomes]
rs60312531	0.80[EUR][1000 genomes]
rs61895119	0.85[EUR][1000 genomes]
rs61895120	0.85[EUR][1000 genomes]
rs61895121	0.85[EUR][1000 genomes]
rs61895122	0.88[EUR][1000 genomes]
rs61895123	0.99[ASN][1000 genomes]
rs61895124	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895125	0.97[EUR][1000 genomes]
rs61895126	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895128	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895131	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895132	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895133	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895134	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895137	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895139	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895140	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111913	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7128429	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73488413	0.80[ASN][1000 genomes]
rs73488490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502466	0.86[EUR][1000 genomes]
rs7482921	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75351600-75366600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:75353800-75366400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75355000-75366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75355200-75366400	Weak transcription	Fetal Brain Male	brain
5	chr11:75357000-75365200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:75362000-75366400	Weak transcription	Fetal Brain Female	brain
7	chr11:75362200-75368600	Enhancers	HSMMtube	muscle
8	chr11:75363000-75364600	Weak transcription	Fetal Heart	heart
9	chr11:75363000-75366600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:75363200-75365400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:75363200-75367600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:75363400-75366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:75363600-75366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:75364000-75364400	Enhancers	Brain Angular Gyrus	brain
15	chr11:75364000-75364400	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:75364000-75364400	Enhancers	Brain Hippocampus Middle	brain
17	chr11:75364000-75364600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:75364000-75364600	Enhancers	NHDF-Ad	bronchial
19	chr11:75364000-75367600	Enhancers	Osteobl	bone
20	chr11:75364000-75368000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:75364000-75368000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:75364000-75368000	Enhancers	HMEC	breast
23	chr11:75364200-75367800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:75364200-75367800	Enhancers	HSMM	muscle
25	chr11:75364200-75368200	Enhancers	NHEK	skin

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