Variant report

Variant	rs12281880
Chromosome Location	chr11:75375756-75375757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75369616..75372196-chr11:75374658..75377795,3	MCF-7	breast:
2	chr11:75362323..75365214-chr11:75375705..75377919,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10160335	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12282340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577652	0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12577671	0.82[CHB][hapmap]
rs12577817	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17134189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134192	0.97[EUR][1000 genomes]
rs17134210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894210	0.85[EUR][1000 genomes]
rs2009247	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544029	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57777945	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58567299	0.87[ASN][1000 genomes]
rs59533422	0.87[ASN][1000 genomes]
rs60312531	0.80[EUR][1000 genomes]
rs61895119	0.85[EUR][1000 genomes]
rs61895120	0.85[EUR][1000 genomes]
rs61895121	0.85[EUR][1000 genomes]
rs61895122	0.88[EUR][1000 genomes]
rs61895123	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs61895124	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895125	0.97[EUR][1000 genomes]
rs61895126	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895128	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895131	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895132	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895133	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895134	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895137	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895139	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895140	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895141	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895142	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895143	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111913	0.92[EUR][1000 genomes]
rs7128429	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73488413	0.80[ASN][1000 genomes]
rs73488490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488497	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502466	0.86[EUR][1000 genomes]
rs7482921	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:75367200-75376400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:75367400-75377800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:75367600-75376400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:75367600-75376600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:75367600-75378200	Weak transcription	Aorta	Aorta
7	chr11:75367800-75377800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:75373600-75377400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:75374200-75376200	Enhancers	Fetal Brain Male	brain
10	chr11:75374200-75376400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:75374200-75376600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:75374200-75377000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:75374400-75375800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:75374400-75376200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr11:75375000-75375800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr11:75375000-75375800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr11:75375000-75376200	Weak transcription	Brain Anterior Caudate	brain
18	chr11:75375200-75376200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:75375400-75375800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr11:75375400-75375800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:75375400-75375800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
22	chr11:75375400-75376600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
23	chr11:75375400-75377600	Flanking Active TSS	Fetal Brain Female	brain
24	chr11:75375400-75378000	Weak transcription	Pancreas	Pancrea
25	chr11:75375600-75375800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:75375600-75377000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr11:75375600-75377000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
28	chr11:75375600-75378000	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links