Variant report

Variant	rs61895121
Chromosome Location	chr11:75323040-75323041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75318249..75321845-chr11:75322154..75325237,3	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10160335	0.85[EUR][1000 genomes]
rs10160495	0.85[EUR][1000 genomes]
rs11236475	0.88[EUR][1000 genomes]
rs11236480	0.85[EUR][1000 genomes]
rs12279672	0.85[EUR][1000 genomes]
rs12281880	0.85[EUR][1000 genomes]
rs12282340	0.85[EUR][1000 genomes]
rs12294083	0.88[EUR][1000 genomes]
rs12574289	0.85[EUR][1000 genomes]
rs12574551	0.88[EUR][1000 genomes]
rs12576145	0.88[EUR][1000 genomes]
rs12576629	0.88[EUR][1000 genomes]
rs12576635	0.88[EUR][1000 genomes]
rs12577202	0.85[EUR][1000 genomes]
rs17134189	0.88[EUR][1000 genomes]
rs17134192	0.88[EUR][1000 genomes]
rs17134210	0.88[EUR][1000 genomes]
rs17134231	0.85[EUR][1000 genomes]
rs17134235	0.85[EUR][1000 genomes]
rs1894210	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2009247	0.85[EUR][1000 genomes]
rs3862804	0.88[EUR][1000 genomes]
rs4544029	0.88[EUR][1000 genomes]
rs57777945	0.88[EUR][1000 genomes]
rs60312531	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61895119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895122	0.91[EUR][1000 genomes]
rs61895123	0.81[EUR][1000 genomes]
rs61895124	0.88[EUR][1000 genomes]
rs61895125	0.88[EUR][1000 genomes]
rs61895126	0.88[EUR][1000 genomes]
rs61895128	0.88[EUR][1000 genomes]
rs61895131	0.88[EUR][1000 genomes]
rs61895132	0.88[EUR][1000 genomes]
rs61895133	0.88[EUR][1000 genomes]
rs61895134	0.88[EUR][1000 genomes]
rs61895137	0.88[EUR][1000 genomes]
rs61895139	0.88[EUR][1000 genomes]
rs61895140	0.88[EUR][1000 genomes]
rs61895141	0.85[EUR][1000 genomes]
rs61895142	0.85[EUR][1000 genomes]
rs61895143	0.85[EUR][1000 genomes]
rs61897960	0.85[EUR][1000 genomes]
rs7128429	0.88[EUR][1000 genomes]
rs73488490	0.85[EUR][1000 genomes]
rs73488497	0.85[EUR][1000 genomes]
rs7482921	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
3	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:75306000-75326200	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:75306000-75326200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:75306400-75323600	Weak transcription	Spleen	Spleen
7	chr11:75306600-75324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:75311600-75324000	Weak transcription	Right Atrium	heart
10	chr11:75313800-75326000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:75314000-75328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:75315200-75324400	Weak transcription	Right Ventricle	heart
13	chr11:75316000-75326200	Weak transcription	Fetal Brain Male	brain
14	chr11:75317600-75324000	Weak transcription	Lung	lung
15	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:75318000-75326000	Weak transcription	Brain Germinal Matrix	brain
17	chr11:75318400-75326400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:75319200-75325000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:75319200-75326000	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:75319400-75324400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:75319600-75324400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:75319600-75324400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:75319600-75329600	Weak transcription	Fetal Stomach	stomach
24	chr11:75320200-75324200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:75320800-75326000	Weak transcription	Fetal Lung	lung
26	chr11:75322200-75326200	Weak transcription	Brain Anterior Caudate	brain
27	chr11:75322200-75326200	Weak transcription	Fetal Brain Female	brain
28	chr11:75322200-75327600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:75322800-75323400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:75322800-75323800	Enhancers	HMEC	breast
31	chr11:75323000-75323200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:75323000-75323400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:75323000-75323600	Enhancers	NHEK	skin
34	chr11:75323000-75323800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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