Variant report

Variant	rs61895132
Chromosome Location	chr11:75347453-75347454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75328231..75330016-chr11:75346840..75348614,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10160335	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10160495	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236480	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12279672	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281880	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12282340	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12294083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574289	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577202	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577817	0.98[ASN][1000 genomes]
rs17134189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134231	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17134235	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894210	0.88[EUR][1000 genomes]
rs2009247	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862804	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4544029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57777945	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58567299	0.86[ASN][1000 genomes]
rs59533422	0.86[ASN][1000 genomes]
rs60312531	0.83[EUR][1000 genomes]
rs61895119	0.88[EUR][1000 genomes]
rs61895120	0.88[EUR][1000 genomes]
rs61895121	0.88[EUR][1000 genomes]
rs61895122	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61895123	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895125	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895137	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895139	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895140	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895141	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895142	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61895143	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61897960	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111913	0.89[EUR][1000 genomes]
rs7128429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488490	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73488497	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73502466	0.84[EUR][1000 genomes]
rs7482921	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75330000-75350800	Weak transcription	Lung	lung
2	chr11:75330200-75356200	Weak transcription	Aorta	Aorta
3	chr11:75339000-75350400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:75340000-75352600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:75341400-75348200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:75342200-75349800	Enhancers	Fetal Brain Male	brain
7	chr11:75343000-75347800	Enhancers	Fetal Intestine Small	intestine
8	chr11:75343800-75347800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:75344200-75348000	Enhancers	Fetal Stomach	stomach
10	chr11:75344800-75348000	Enhancers	Fetal Lung	lung
11	chr11:75344800-75348400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:75345200-75347800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:75345200-75348000	Enhancers	Fetal Muscle Leg	muscle
14	chr11:75345200-75350800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:75345600-75348000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:75345600-75350800	Weak transcription	Left Ventricle	heart
17	chr11:75346000-75347600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:75346400-75348000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:75346400-75350800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:75346600-75348000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:75346600-75350800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:75346600-75351600	Enhancers	Brain Germinal Matrix	brain
23	chr11:75346800-75350800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:75346800-75350800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:75346800-75350800	Weak transcription	GM12878-XiMat	blood
26	chr11:75346800-75350800	Weak transcription	NH-A	brain
27	chr11:75346800-75351200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:75347000-75350200	Weak transcription	Brain Anterior Caudate	brain
29	chr11:75347000-75350600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:75347000-75350600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:75347000-75350600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:75347000-75350600	Enhancers	Fetal Brain Female	brain
33	chr11:75347000-75350600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:75347000-75350800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:75347000-75350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:75347000-75350800	Weak transcription	Right Atrium	heart
37	chr11:75347000-75350800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:75347200-75347600	Weak transcription	HSMM	muscle
39	chr11:75347200-75349200	Weak transcription	Fetal Heart	heart
40	chr11:75347200-75349200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:75347200-75349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:75347200-75350000	Weak transcription	HSMMtube	muscle
43	chr11:75347200-75350400	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:75347200-75350600	Weak transcription	Fetal Kidney	kidney
45	chr11:75347200-75350800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:75347200-75350800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:75347200-75350800	Weak transcription	Ovary	ovary
48	chr11:75347200-75350800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:75347200-75351000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:75347400-75350400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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