Variant report

Variant	rs11236475
Chromosome Location	chr11:75346315-75346316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10160335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10160495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12279672	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12282340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12294083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577652	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12577671	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12577817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17134189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134192	1.00[EUR][1000 genomes]
rs17134210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17134235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894210	0.88[EUR][1000 genomes]
rs2009247	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4544029	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57777945	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58567299	0.86[ASN][1000 genomes]
rs59533422	0.86[ASN][1000 genomes]
rs60312531	0.83[EUR][1000 genomes]
rs61895119	0.88[EUR][1000 genomes]
rs61895120	0.88[EUR][1000 genomes]
rs61895121	0.88[EUR][1000 genomes]
rs61895122	0.91[EUR][1000 genomes]
rs61895123	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895124	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895125	1.00[EUR][1000 genomes]
rs61895126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895133	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895134	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895137	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895139	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895140	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895141	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61895142	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61895143	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61897960	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111913	0.89[EUR][1000 genomes]
rs7128429	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488490	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73488497	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73502466	0.84[EUR][1000 genomes]
rs7482921	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75330000-75350800	Weak transcription	Lung	lung
2	chr11:75330200-75356200	Weak transcription	Aorta	Aorta
3	chr11:75335400-75346800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:75338800-75346400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:75339000-75350400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:75339200-75346400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:75339200-75346600	Weak transcription	Spleen	Spleen
8	chr11:75340000-75352600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:75341400-75348200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:75342200-75349800	Enhancers	Fetal Brain Male	brain
11	chr11:75342800-75347200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:75343000-75347800	Enhancers	Fetal Intestine Small	intestine
13	chr11:75343400-75346600	Enhancers	Fetal Brain Female	brain
14	chr11:75343600-75346400	Weak transcription	Right Atrium	heart
15	chr11:75343800-75346600	Weak transcription	K562	blood
16	chr11:75343800-75347800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:75344000-75347400	Enhancers	Fetal Intestine Large	intestine
18	chr11:75344200-75348000	Enhancers	Fetal Stomach	stomach
19	chr11:75344800-75347200	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:75344800-75348000	Enhancers	Fetal Lung	lung
21	chr11:75344800-75348400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:75345200-75346400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr11:75345200-75346600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:75345200-75346800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:75345200-75347800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:75345200-75348000	Enhancers	Fetal Muscle Leg	muscle
27	chr11:75345200-75350800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:75345400-75347200	Enhancers	Fetal Heart	heart
29	chr11:75345600-75347200	Enhancers	Ovary	ovary
30	chr11:75345600-75348000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:75345600-75350800	Weak transcription	Left Ventricle	heart
32	chr11:75345800-75347400	Enhancers	Colon Smooth Muscle	Colon
33	chr11:75346000-75346400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:75346000-75346400	Bivalent Enhancer	Osteobl	bone
35	chr11:75346000-75346600	Bivalent Enhancer	HepG2	liver
36	chr11:75346000-75346800	Enhancers	HMEC	breast
37	chr11:75346000-75346800	Enhancers	NH-A	brain
38	chr11:75346000-75347000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:75346000-75347000	Enhancers	Rectal Smooth Muscle	rectum
40	chr11:75346000-75347200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:75346000-75347200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:75346000-75347600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:75346200-75346400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr11:75346200-75346400	Enhancers	Fetal Thymus	thymus
45	chr11:75346200-75346400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr11:75346200-75346400	Enhancers	Small Intestine	intestine
47	chr11:75346200-75346400	Enhancers	Stomach Smooth Muscle	stomach
48	chr11:75346200-75346600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr11:75346200-75346600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:75346200-75346600	Flanking Active TSS	Brain Germinal Matrix	brain

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