Variant report

Variant	rs9783396
Chromosome Location	chr11:75292087-75292088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75291103..75293219-chr11:75299470..75301850,2	MCF-7	breast:
2	chr11:75290774..75292517-chr11:75302015..75303916,2	K562	blood:
3	chr11:75279889..75285292-chr11:75289695..75295814,8	K562	blood:

Variant related genes	Relation type
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1894210	0.83[ASN][1000 genomes]
rs2040333	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60312531	0.83[ASN][1000 genomes]
rs61895093	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895095	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783403	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75275200-75293800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:75275400-75293400	Weak transcription	Fetal Brain Male	brain
3	chr11:75275600-75293400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:75277800-75293400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:75278000-75293200	Weak transcription	Right Atrium	heart
6	chr11:75281200-75293200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:75281400-75293200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:75282200-75293200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:75282800-75293400	Weak transcription	Brain Substantia Nigra	brain
10	chr11:75282800-75293800	Weak transcription	A549	lung
11	chr11:75283200-75293200	Weak transcription	Psoas Muscle	Psoas
12	chr11:75283200-75293800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:75283800-75293400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:75284200-75292600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:75284400-75293000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:75284400-75293400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:75284400-75293600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:75284400-75293800	Weak transcription	Fetal Heart	heart
19	chr11:75284600-75293200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:75284600-75294000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:75284800-75293200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:75284800-75293600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:75284800-75293800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:75284800-75293800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:75285000-75293400	Weak transcription	Liver	Liver
26	chr11:75285000-75293600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:75285000-75293800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:75285000-75294000	Weak transcription	Aorta	Aorta
29	chr11:75285000-75294000	Weak transcription	HMEC	breast
30	chr11:75285200-75293400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:75285200-75293400	Weak transcription	Brain Anterior Caudate	brain
32	chr11:75285200-75293400	Weak transcription	NHEK	skin
33	chr11:75285200-75293600	Weak transcription	Brain Angular Gyrus	brain
34	chr11:75285200-75293600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:75285400-75293600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:75285400-75293600	Weak transcription	Fetal Lung	lung
37	chr11:75285400-75293800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr11:75285600-75293400	Weak transcription	NH-A	brain
39	chr11:75285600-75293800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:75285600-75293800	Weak transcription	HSMMtube	muscle
41	chr11:75285600-75294000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:75285800-75293400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:75285800-75293400	Weak transcription	Primary T cells from cord blood	blood
44	chr11:75285800-75293600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:75286000-75294000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:75286600-75293400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:75286800-75293200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:75287200-75293400	Weak transcription	Esophagus	oesophagus
49	chr11:75287400-75293600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr11:75287600-75293200	Weak transcription	Right Ventricle	heart

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