Variant report

Variant	rs61895095
Chromosome Location	chr11:75298468-75298469
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75294037..75296598-chr11:75297772..75301531,5	MCF-7	breast:
2	chr11:75297859..75300646-chr11:75417581..75420277,2	K562	blood:
3	chr11:75258598..75261334-chr11:75297615..75299560,2	K562	blood:
4	chr11:75270140..75272443-chr11:75298108..75300358,2	K562	blood:

Variant related genes	Relation type
ENSG00000255326	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1894210	0.83[ASN][1000 genomes]
rs2040333	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60312531	0.83[ASN][1000 genomes]
rs61895093	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895094	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783396	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783403	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75294600-75303400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:75295200-75299000	Weak transcription	Liver	Liver
3	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
4	chr11:75295600-75298600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:75295600-75298600	Weak transcription	Pancreas	Pancrea
6	chr11:75295600-75299000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:75295600-75300400	Weak transcription	HSMMtube	muscle
8	chr11:75295600-75303800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:75295600-75304000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:75295600-75310800	Weak transcription	Right Atrium	heart
11	chr11:75295600-75314200	Weak transcription	Lung	lung
12	chr11:75295800-75298600	Weak transcription	Fetal Intestine Large	intestine
13	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:75296000-75298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:75296000-75304000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:75296200-75301200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:75296200-75304200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:75296600-75302000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:75296600-75302400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:75296600-75305800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:75296600-75321000	Weak transcription	Ovary	ovary
22	chr11:75296800-75300800	Weak transcription	Fetal Lung	lung
23	chr11:75296800-75301000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:75296800-75303400	Weak transcription	HUVEC	blood vessel
25	chr11:75297000-75298600	Weak transcription	K562	blood
26	chr11:75297000-75299600	Weak transcription	Fetal Heart	heart
27	chr11:75297000-75305200	Weak transcription	Spleen	Spleen
28	chr11:75297600-75299800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:75297800-75298800	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr11:75297800-75299000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:75297800-75299000	Strong transcription	Fetal Brain Female	brain
32	chr11:75297800-75299600	Strong transcription	Brain Germinal Matrix	brain
33	chr11:75297800-75300400	Strong transcription	Fetal Stomach	stomach
34	chr11:75297800-75303600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:75298000-75298600	Genic enhancers	Fetal Muscle Leg	muscle
36	chr11:75298000-75299600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:75298000-75301000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:75298200-75298800	Enhancers	Right Ventricle	heart
39	chr11:75298200-75301800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr11:75298400-75299000	Enhancers	Duodenum Mucosa	Duodenum

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