Variant report

Variant	rs73505021
Chromosome Location	chr11:75287180-75287181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75286949..75288532-chr11:75369547..75372456,2	MCF-7	breast:
2	chr11:75285840..75288464-chr11:75427024..75428606,2	K562	blood:
3	chr11:75286652..75290582-chr11:75292164..75295737,7	MCF-7	breast:
4	chr11:75257006..75261542-chr11:75285298..75289565,6	MCF-7	breast:
5	chr11:75286806..75288812-chr11:75301623..75303290,2	MCF-7	breast:
6	chr11:75285729..75287611-chr20:62611285..62613956,2	MCF-7	breast:
7	chr11:75287153..75290059-chr11:75296076..75298059,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101161	Chromatin interaction
ENSG00000255326	Chromatin interaction
ENSG00000130590	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12577817	1.00[AMR][1000 genomes]
rs57074000	1.00[EUR][1000 genomes]
rs58745525	1.00[AMR][1000 genomes]
rs73494855	1.00[AMR][1000 genomes]
rs73494864	1.00[AMR][1000 genomes]
rs73505019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv525193	chr11:75276178-75287341	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75274600-75287200	Weak transcription	Primary B cells from cord blood	blood
2	chr11:75275200-75293800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:75275400-75293400	Weak transcription	Fetal Brain Male	brain
4	chr11:75275600-75293400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:75277200-75287200	Strong transcription	Fetal Intestine Small	intestine
6	chr11:75277800-75293400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:75278000-75287400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:75278000-75293200	Weak transcription	Right Atrium	heart
9	chr11:75281200-75293200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:75281400-75293200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:75282200-75287400	Weak transcription	K562	blood
12	chr11:75282200-75293200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:75282800-75288200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:75282800-75293400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:75282800-75293800	Weak transcription	A549	lung
16	chr11:75283200-75287600	Weak transcription	HepG2	liver
17	chr11:75283200-75287800	Weak transcription	Small Intestine	intestine
18	chr11:75283200-75293200	Weak transcription	Psoas Muscle	Psoas
19	chr11:75283200-75293800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:75283400-75287800	Weak transcription	Stomach Mucosa	stomach
21	chr11:75283800-75287600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:75283800-75293400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:75284200-75292600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:75284400-75287400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:75284400-75287400	Weak transcription	Fetal Thymus	thymus
26	chr11:75284400-75293000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:75284400-75293400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:75284400-75293600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:75284400-75293800	Weak transcription	Fetal Heart	heart
30	chr11:75284600-75287600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr11:75284600-75287600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:75284600-75288600	Weak transcription	Hela-S3	cervix
33	chr11:75284600-75293200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:75284600-75294000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:75284800-75287400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:75284800-75287600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:75284800-75288400	Weak transcription	Pancreas	Pancrea
38	chr11:75284800-75293200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:75284800-75293600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:75284800-75293800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:75284800-75293800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:75285000-75287200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:75285000-75287200	Weak transcription	Colonic Mucosa	Colon
44	chr11:75285000-75287400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:75285000-75287400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:75285000-75287400	Weak transcription	Right Ventricle	heart
47	chr11:75285000-75287600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:75285000-75287600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:75285000-75287600	Weak transcription	HUVEC	blood vessel
50	chr11:75285000-75293400	Weak transcription	Liver	Liver

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