Variant report

Variant	rs12577048
Chromosome Location	chr11:24699102-24699103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10454001	0.82[EUR][1000 genomes]
rs10767236	0.82[AMR][1000 genomes]
rs10834426	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10834427	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10834428	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10834429	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10834430	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10834431	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10834432	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11028096	0.81[EUR][1000 genomes]
rs11028097	0.81[EUR][1000 genomes]
rs11028100	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11028102	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11028103	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11028104	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11028105	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12574317	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12574669	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12576065	0.81[EUR][1000 genomes]
rs12576818	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12576845	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35843300	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4316510	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4316511	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4575270	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4923204	0.82[EUR][1000 genomes]
rs72882406	0.81[EUR][1000 genomes]
rs72882416	0.85[EUR][1000 genomes]
rs72882417	0.86[EUR][1000 genomes]
rs7394676	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7394678	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7395763	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7396077	0.85[EUR][1000 genomes]
rs7481607	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7944164	0.82[AMR][1000 genomes]
rs7944845	0.81[EUR][1000 genomes]
rs9705232	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897093	chr11:24675207-24736493	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24691800-24700200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:24692000-24700000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links