Variant report

Variant	rs12578810
Chromosome Location	chr12:117738948-117738949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10850809	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10850810	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11068438	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11068444	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11068445	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11068446	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11068447	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11831562	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12227412	0.85[EUR][1000 genomes]
rs12810591	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12811583	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12811676	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12811988	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12812274	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12824048	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34022865	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34249731	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34929026	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35285730	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35320403	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35555584	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35718760	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35736046	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36020061	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3782206	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3782208	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3782211	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3825103	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55805437	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56114072	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7139134	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7299154	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7310618	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7959158	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7961147	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9658286	0.88[EUR][1000 genomes]
rs9658297	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9658300	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9658307	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9658308	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9658309	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117697200-117746200	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117728000-117771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:117732600-117747000	Weak transcription	NHEK	skin
4	chr12:117735000-117748000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:117738800-117739800	Strong transcription	Skeletal Muscle Male	skeletal muscle

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