Variant report

Variant	rs35320403
Chromosome Location	chr12:117752761-117752762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10850809	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10850810	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11068438	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11068444	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11068445	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11068446	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11068447	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11831562	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12227412	0.93[EUR][1000 genomes]
rs12578810	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12810591	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12811583	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12811676	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12811988	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12812274	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12824048	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34022865	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34249731	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34929026	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35285730	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35555584	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35718760	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35736046	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36020061	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3782206	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3782208	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3782211	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3825103	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55805437	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56114072	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7139134	0.90[EUR][1000 genomes]
rs7299154	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7310618	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7959158	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7961147	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9658286	0.90[EUR][1000 genomes]
rs9658297	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9658300	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9658307	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9658308	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9658309	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324272	chr12:117748669-117753067	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117728000-117771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:117739800-117771400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:117740000-117756400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:117749400-117770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:117749600-117756400	Weak transcription	NHEK	skin

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