Variant report

Variant	rs12578853
Chromosome Location	chr12:85401405-85401406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12313598	1.00[EUR][1000 genomes]
rs12578769	1.00[EUR][1000 genomes]
rs12579838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12581165	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12582207	1.00[AMR][1000 genomes]
rs57228595	1.00[AMR][1000 genomes]
rs61539171	1.00[AMR][1000 genomes]
rs73377598	1.00[EUR][1000 genomes]
rs73377601	1.00[EUR][1000 genomes]
rs73377602	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899377	chr12:85157346-85629241	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1040452	chr12:85179586-85747907	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85399600-85402200	Enhancers	Thymus	Thymus
2	chr12:85399600-85403000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:85400200-85404000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:85400400-85401600	Weak transcription	Fetal Thymus	thymus
5	chr12:85400800-85401800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr12:85400800-85402400	Enhancers	Hela-S3	cervix
7	chr12:85401000-85402400	Enhancers	Liver	Liver
8	chr12:85401200-85402400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:85401200-85402600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:85401400-85402000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:85401400-85402200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:85401400-85402200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:85401400-85402200	Enhancers	Adipose Nuclei	Adipose
14	chr12:85401400-85402400	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links