Variant report

Variant	rs73377601
Chromosome Location	chr12:85397936-85397937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12313598	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12578769	1.00[EUR][1000 genomes]
rs12578853	1.00[EUR][1000 genomes]
rs12579838	1.00[EUR][1000 genomes]
rs12581165	1.00[EUR][1000 genomes]
rs73377598	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73377602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899377	chr12:85157346-85629241	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1040452	chr12:85179586-85747907	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85391000-85399000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:85391000-85401200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:85394600-85400800	Weak transcription	Hela-S3	cervix
4	chr12:85394800-85398000	Weak transcription	Thymus	Thymus
5	chr12:85396200-85398400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:85397400-85398400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:85397400-85399400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:85397600-85398600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:85397800-85398000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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