Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AMIGO2-4	chr12:47368515-47372496	l_636_NR_024266

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11183673	1.00[EUR][1000 genomes]
rs11183675	1.00[EUR][1000 genomes]
rs17097455	0.88[ASN][1000 genomes]
rs17097462	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17097469	0.88[ASN][1000 genomes]
rs17097470	0.88[ASN][1000 genomes]
rs17097492	0.88[ASN][1000 genomes]
rs17097496	0.87[ASN][1000 genomes]
rs17097506	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17097509	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17097566	0.85[ASN][1000 genomes]
rs4623984	1.00[EUR][1000 genomes]
rs4768765	1.00[EUR][1000 genomes]
rs56963010	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57263012	0.88[ASN][1000 genomes]
rs58387327	0.86[ASN][1000 genomes]
rs59050709	0.86[ASN][1000 genomes]
rs59867714	0.88[ASN][1000 genomes]
rs60211673	0.85[ASN][1000 genomes]
rs60621077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60791193	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61228569	0.86[ASN][1000 genomes]
rs7294950	0.88[ASN][1000 genomes]
rs7298969	0.88[ASN][1000 genomes]
rs73282808	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73282816	0.88[ASN][1000 genomes]
rs73282837	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73287114	0.86[ASN][1000 genomes]
rs73287116	0.86[ASN][1000 genomes]
rs73287907	1.00[EUR][1000 genomes]
rs73287955	0.88[ASN][1000 genomes]
rs73299374	0.88[ASN][1000 genomes]
rs7963571	0.91[EUR][1000 genomes]
rs7965639	0.88[ASN][1000 genomes]
rs7976836	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47359800-47377400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:47360000-47375000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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