Variant report

Variant	rs12581706
Chromosome Location	chr12:25335856-25335857
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10505960	0.82[AMR][1000 genomes]
rs10771174	0.80[ASN][1000 genomes]
rs10771177	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10842473	0.82[AMR][1000 genomes]
rs10842475	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10842492	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10842493	0.80[ASN][1000 genomes]
rs10842494	0.80[ASN][1000 genomes]
rs10842496	0.80[ASN][1000 genomes]
rs10842498	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10842499	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10842501	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10842504	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10842505	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11047854	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11047855	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11047856	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11047865	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11047868	0.82[ASN][1000 genomes]
rs11047870	0.84[ASN][1000 genomes]
rs11047887	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11047888	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11047894	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11047895	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11047896	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11047897	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11047901	0.81[ASN][1000 genomes]
rs11047909	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1137188	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1137189	0.81[AMR][1000 genomes]
rs1137196	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11513449	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11608657	0.81[ASN][1000 genomes]
rs11611468	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12245	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12424283	0.81[ASN][1000 genomes]
rs12424685	0.83[AMR][1000 genomes]
rs12578773	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12579073	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12581134	0.81[AMR][1000 genomes]
rs12587	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12810577	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12814442	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12818169	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12820019	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12822857	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12828609	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12830058	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12830336	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13096	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17329025	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2352782	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2352784	0.83[AMR][1000 genomes]
rs34898174	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4246228	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4246229	0.81[AMR][1000 genomes]
rs4494384	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4551857	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4559767	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4963859	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4963860	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61020746	0.82[AMR][1000 genomes]
rs6487461	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs712	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7298636	0.82[ASN][1000 genomes]
rs7302922	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7303094	0.92[ASN][1000 genomes]
rs7306769	0.84[ASN][1000 genomes]
rs7312739	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7955844	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8720	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9266	0.81[ASN][1000 genomes]
rs9634100	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1067577	chr12:24791283-25346677	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv529514	chr12:24791283-25346677	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv515612	chr12:25272027-25341177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv557797	chr12:25272027-25341177	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv898922	chr12:25274593-25408047	Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25335000-25338600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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