Variant report

Variant	rs12581769
Chromosome Location	chr12:105074433-105074434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105073708..105074536-chr12:105446439..105447355,3	MCF-7	breast:
2	chr12:104775827..104776339-chr12:105073605..105074446,2	MCF-7	breast:
3	chr12:105071577..105074645-chr12:105076983..105080645,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12579373	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12581376	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12581735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036293	1.00[AFR][1000 genomes]
rs56176681	0.97[ASN][1000 genomes]
rs58731514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs703667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs703671	0.88[ASN][1000 genomes]
rs703672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs703677	0.88[ASN][1000 genomes]
rs703678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73187417	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73390104	0.97[ASN][1000 genomes]
rs7954613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7964130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs861345	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105065400-105076000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:105065600-105075400	Weak transcription	Primary T cells from cord blood	blood
3	chr12:105066600-105077800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:105067600-105076400	Weak transcription	Brain Anterior Caudate	brain
5	chr12:105067800-105076200	Weak transcription	Right Ventricle	heart
6	chr12:105067800-105076600	Weak transcription	Left Ventricle	heart
7	chr12:105067800-105078600	Weak transcription	Brain Substantia Nigra	brain
8	chr12:105067800-105096000	Weak transcription	K562	blood
9	chr12:105068000-105076000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr12:105068000-105077600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr12:105068200-105078600	Weak transcription	NHDF-Ad	bronchial
12	chr12:105068400-105076200	Weak transcription	Colon Smooth Muscle	Colon
13	chr12:105069400-105076400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr12:105069800-105074600	Enhancers	Placenta	Placenta
15	chr12:105070600-105074800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr12:105070600-105076400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr12:105070800-105076600	Weak transcription	Lung	lung
18	chr12:105071200-105076000	Weak transcription	Fetal Stomach	stomach
19	chr12:105071200-105085800	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:105071800-105076200	Weak transcription	Right Atrium	heart
21	chr12:105071800-105079200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:105071800-105085800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:105072200-105079400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr12:105072200-105089000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:105072800-105076200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:105072800-105076200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:105073000-105075000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr12:105073000-105075000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr12:105073000-105075600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr12:105073000-105076200	Enhancers	Primary hematopoietic stem cells	blood
31	chr12:105073000-105077400	Weak transcription	Fetal Heart	heart
32	chr12:105073200-105074600	Enhancers	Fetal Muscle Leg	muscle
33	chr12:105073200-105076000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr12:105073200-105076400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr12:105073200-105076400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr12:105073400-105074600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr12:105073400-105075200	Enhancers	Primary B cells from peripheral blood	blood
38	chr12:105073400-105076000	Enhancers	Primary B cells from cord blood	blood
39	chr12:105073400-105076200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr12:105073400-105076200	Enhancers	GM12878-XiMat	blood
41	chr12:105073600-105074800	Enhancers	Fetal Thymus	thymus
42	chr12:105073600-105076000	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr12:105073600-105076400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr12:105073800-105074600	Enhancers	Esophagus	oesophagus
45	chr12:105073800-105074600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr12:105073800-105074800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr12:105073800-105074800	Enhancers	HSMMtube	muscle
48	chr12:105073800-105076000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr12:105073800-105076200	Weak transcription	A549	lung
50	chr12:105074000-105074800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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