Variant report

Variant	rs12582533
Chromosome Location	chr12:76078382-76078383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:76077618..76079261-chr12:76083300..76084983,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10748288	0.84[ASN][1000 genomes]
rs11830455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578249	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12581669	1.00[ASN][1000 genomes]
rs17115468	0.99[ASN][1000 genomes]
rs57403522	0.92[ASN][1000 genomes]
rs7304883	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304886	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310772	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73363668	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7486504	1.00[ASN][1000 genomes]
rs7488562	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036987	chr12:75415532-76101559	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76076200-76098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:76076600-76079800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:76076800-76080000	Enhancers	NHEK	skin
4	chr12:76077000-76079400	Enhancers	Fetal Stomach	stomach
5	chr12:76077000-76079600	Enhancers	HMEC	breast
6	chr12:76077000-76081800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:76077200-76078400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:76077200-76079200	Enhancers	K562	blood
9	chr12:76077200-76079800	Enhancers	NHLF	lung
10	chr12:76077400-76078400	Enhancers	NHDF-Ad	bronchial
11	chr12:76077600-76079800	Enhancers	NH-A	brain
12	chr12:76077800-76078400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr12:76077800-76078400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:76077800-76079600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:76077800-76079800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr12:76078000-76079000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:76078200-76078600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:76078200-76078600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:76078200-76078800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:76078200-76079200	Flanking Active TSS	Osteobl	bone
21	chr12:76078200-76079600	Enhancers	HSMMtube	muscle
22	chr12:76078200-76080000	Enhancers	Muscle Satellite Cultured Cells	--

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