Variant report

Variant	rs12582597
Chromosome Location	chr12:41743326-41743327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10785234	0.93[ASN][1000 genomes]
rs10880037	1.00[ASN][1000 genomes]
rs10880069	0.96[ASN][1000 genomes]
rs10880070	0.96[ASN][1000 genomes]
rs11180829	1.00[ASN][1000 genomes]
rs11180830	1.00[ASN][1000 genomes]
rs11180831	1.00[ASN][1000 genomes]
rs11180832	1.00[ASN][1000 genomes]
rs11180833	1.00[ASN][1000 genomes]
rs11180840	0.98[ASN][1000 genomes]
rs11180841	0.98[ASN][1000 genomes]
rs11180844	1.00[ASN][1000 genomes]
rs11180845	0.98[ASN][1000 genomes]
rs11180849	1.00[ASN][1000 genomes]
rs11180852	1.00[ASN][1000 genomes]
rs11180855	1.00[ASN][1000 genomes]
rs11180874	0.96[ASN][1000 genomes]
rs11180875	0.96[ASN][1000 genomes]
rs11180877	0.96[ASN][1000 genomes]
rs11180879	0.96[ASN][1000 genomes]
rs11180883	0.96[ASN][1000 genomes]
rs11180886	0.95[ASN][1000 genomes]
rs12228172	0.96[ASN][1000 genomes]
rs12230294	1.00[ASN][1000 genomes]
rs12232019	0.98[ASN][1000 genomes]
rs12299757	0.96[ASN][1000 genomes]
rs12306958	0.96[ASN][1000 genomes]
rs3214027	0.96[ASN][1000 genomes]
rs9652045	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41741200-41749400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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