Variant report

Variant	rs11180886
Chromosome Location	chr12:41793920-41793921
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10219633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10506194	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10506196	0.89[CHB][hapmap]
rs10785234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10880037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10880068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10880070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10880080	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880084	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10880085	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880090	0.89[CHB][hapmap]
rs10880097	0.81[JPT][hapmap]
rs11180782	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11180829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11180830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11180831	0.95[ASN][1000 genomes]
rs11180832	0.95[ASN][1000 genomes]
rs11180833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11180840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11180841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11180844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11180845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11180849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11180852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11180855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11180860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180868	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180874	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs11180875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11180877	0.98[ASN][1000 genomes]
rs11180879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11180883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11180903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180928	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180941	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180947	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180949	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180952	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180954	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180955	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11180959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180962	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180963	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180964	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11180965	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180966	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180970	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11180972	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11180973	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11180974	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11180975	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11180976	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11180978	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs11180983	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11180989	0.81[JPT][hapmap]
rs11180995	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11180997	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11181000	0.89[CHB][hapmap]
rs11181010	0.81[JPT][hapmap]
rs12227540	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs12228172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12230294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12231433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12231803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12232019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12299757	0.98[ASN][1000 genomes]
rs12306958	0.98[ASN][1000 genomes]
rs12582204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12582597	0.95[ASN][1000 genomes]
rs12582987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1379766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1458153	0.81[JPT][hapmap]
rs1458172	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1458173	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs17129417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129436	0.88[CHB][hapmap]
rs17835484	0.85[CHB][hapmap]
rs1918230	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2125289	0.88[CHB][hapmap]
rs3214027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs725527	0.81[JPT][hapmap]
rs7299395	0.82[JPT][hapmap]
rs7968280	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7969769	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7979435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9652045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899036	chr12:41777144-41807859	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv899038	chr12:41784137-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv818915	chr12:41784997-41811063	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv899039	chr12:41784997-41813207	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv1050627	chr12:41789891-41809009	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41793600-41794200	Enhancers	Brain Substantia Nigra	brain
2	chr12:41793600-41794400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:41793600-41794400	Enhancers	Brain Germinal Matrix	brain
4	chr12:41793800-41794200	Enhancers	Brain Hippocampus Middle	brain
5	chr12:41793800-41794400	Enhancers	Primary neutrophils fromperipheralblood	blood

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