Variant report

Variant	rs11180932
Chromosome Location	chr12:41862389-41862390
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10219633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10506194	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs10506196	0.88[CHB][hapmap]
rs10785234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880069	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10880083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880084	0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10880085	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880090	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs11180782	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11180829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180830	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180833	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180840	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180844	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180868	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180874	1.00[CHB][hapmap]
rs11180875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180879	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180883	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180886	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11180934	0.87[ASN][1000 genomes]
rs11180935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11180938	0.97[ASN][1000 genomes]
rs11180941	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11180946	0.97[ASN][1000 genomes]
rs11180947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11180948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11180949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11180950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11180952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11180953	0.94[ASN][1000 genomes]
rs11180954	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180955	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11180957	0.94[ASN][1000 genomes]
rs11180959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180964	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11180970	0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs11180972	0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs11180973	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11180974	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11180975	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11180976	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11180978	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11180983	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs11180989	0.81[JPT][hapmap]
rs11180995	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11180997	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs11181000	0.88[CHB][hapmap]
rs11181010	0.82[JPT][hapmap]
rs12227540	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs12228172	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12230294	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12231433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12231803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12232019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12581707	0.84[ASN][1000 genomes]
rs12582035	0.94[ASN][1000 genomes]
rs12582204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12582987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1379766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1458153	0.81[JPT][hapmap]
rs1458172	0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1458173	0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs17129417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17129436	0.86[CHB][hapmap]
rs17835484	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1918230	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2125289	0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2252312	0.84[ASN][1000 genomes]
rs3214027	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs725527	0.81[JPT][hapmap]
rs7299395	0.82[JPT][hapmap]
rs7968280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7969769	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7979435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9652045	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3501985	chr12:41847710-41863530	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3501996	chr12:41847724-41863526	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41858400-41863000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:41860200-41869200	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41861000-41866600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:41861000-41866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:41861400-41862800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:41861400-41870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:41861400-41870400	Weak transcription	Brain Anterior Caudate	brain
8	chr12:41862000-41863000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:41862000-41866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:41862000-41869800	Weak transcription	Brain Germinal Matrix	brain
11	chr12:41862000-41870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:41862200-41863200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:41862200-41866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:41862200-41869400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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