Variant report

Variant	rs12581707
Chromosome Location	chr12:41898924-41898925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10506194	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10506196	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs10880080	0.89[ASN][1000 genomes]
rs10880084	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880090	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880101	0.81[JPT][hapmap]
rs11180928	0.82[ASN][1000 genomes]
rs11180932	0.84[ASN][1000 genomes]
rs11180935	0.86[ASN][1000 genomes]
rs11180938	0.86[ASN][1000 genomes]
rs11180944	0.86[ASN][1000 genomes]
rs11180946	0.86[ASN][1000 genomes]
rs11180947	0.86[ASN][1000 genomes]
rs11180948	0.86[ASN][1000 genomes]
rs11180949	0.86[ASN][1000 genomes]
rs11180950	0.86[ASN][1000 genomes]
rs11180952	0.86[ASN][1000 genomes]
rs11180953	0.89[ASN][1000 genomes]
rs11180957	0.89[ASN][1000 genomes]
rs11180959	0.89[ASN][1000 genomes]
rs11180962	0.89[ASN][1000 genomes]
rs11180963	0.89[ASN][1000 genomes]
rs11180964	0.89[ASN][1000 genomes]
rs11180965	0.89[ASN][1000 genomes]
rs11180966	0.89[ASN][1000 genomes]
rs11180967	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11180968	0.89[ASN][1000 genomes]
rs11180969	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11180970	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180971	1.00[EUR][1000 genomes]
rs11180972	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180973	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180974	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180975	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180976	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180978	0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180982	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11180983	0.84[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11180989	0.90[JPT][hapmap]
rs11180995	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11180997	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11181000	0.89[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12227303	0.81[JPT][hapmap]
rs12227540	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12582035	0.89[ASN][1000 genomes]
rs12582909	0.81[JPT][hapmap]
rs1379766	0.89[ASN][1000 genomes]
rs1458153	0.90[JPT][hapmap]
rs1458172	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458173	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129417	0.89[ASN][1000 genomes]
rs17129436	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17835484	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2125289	0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635145	1.00[EUR][1000 genomes]
rs59955144	1.00[EUR][1000 genomes]
rs6582337	1.00[EUR][1000 genomes]
rs713288	1.00[EUR][1000 genomes]
rs725527	0.90[JPT][hapmap]
rs7968280	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv826349	chr12:41878846-41911495	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41869600-41905200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41877400-41903600	Weak transcription	Ovary	ovary
3	chr12:41887600-41901400	Weak transcription	Brain Substantia Nigra	brain
4	chr12:41894000-41900600	Weak transcription	Brain Germinal Matrix	brain
5	chr12:41898000-41900200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr12:41898600-41901000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:41898600-41915400	Weak transcription	Aorta	Aorta

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