Variant report

Variant	rs12582909
Chromosome Location	chr12:41957180-41957181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10506194	0.91[JPT][hapmap]
rs10506196	0.81[CHB][hapmap]
rs10880084	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs10880090	0.91[JPT][hapmap]
rs10880097	0.82[JPT][hapmap]
rs10880101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11180970	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs11180972	0.92[JPT][hapmap]
rs11180973	0.92[JPT][hapmap]
rs11180974	0.92[JPT][hapmap]
rs11180975	0.92[JPT][hapmap]
rs11180976	0.92[JPT][hapmap]
rs11180978	0.92[JPT][hapmap]
rs11180983	0.86[JPT][hapmap]
rs11180989	0.91[JPT][hapmap]
rs11180995	0.92[JPT][hapmap]
rs11180997	0.91[JPT][hapmap]
rs11181000	0.82[JPT][hapmap]
rs11181005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181010	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181012	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181013	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181015	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181019	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11181020	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11181023	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11181025	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12227303	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12227540	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12230351	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12581662	1.00[EUR][1000 genomes]
rs12581707	0.81[JPT][hapmap]
rs1458153	0.91[JPT][hapmap]
rs1458172	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1458173	0.92[JPT][hapmap]
rs1497182	1.00[EUR][1000 genomes]
rs17129436	0.81[JPT][hapmap]
rs17129470	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17129528	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17129591	1.00[EUR][1000 genomes]
rs17129603	1.00[EUR][1000 genomes]
rs17129637	1.00[EUR][1000 genomes]
rs17129723	1.00[EUR][1000 genomes]
rs17129727	1.00[EUR][1000 genomes]
rs17835484	0.91[JPT][hapmap]
rs2122796	1.00[EUR][1000 genomes]
rs2125289	0.91[JPT][hapmap]
rs285578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs60761629	1.00[EUR][1000 genomes]
rs725527	0.91[JPT][hapmap]
rs754143	1.00[EUR][1000 genomes]
rs7979088	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41944600-41966200	Weak transcription	Ovary	ovary
2	chr12:41948600-41959800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:41956800-41958000	Strong transcription	Colon Smooth Muscle	Colon
4	chr12:41957000-41957200	ZNF genes & repeats	Aorta	Aorta
5	chr12:41957000-41957200	Enhancers	Left Ventricle	heart
6	chr12:41957000-41957800	Strong transcription	Stomach Smooth Muscle	stomach

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