Variant report

Variant	rs11181000
Chromosome Location	chr12:41947900-41947901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10219633	0.88[CHB][hapmap]
rs10506194	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10506196	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10880068	0.89[CHB][hapmap]
rs10880069	0.89[CHB][hapmap]
rs10880070	0.89[CHB][hapmap]
rs10880080	0.86[CHB][hapmap]
rs10880083	0.89[CHB][hapmap]
rs10880084	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10880085	0.89[CHB][hapmap]
rs10880090	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10880097	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10880101	0.81[JPT][hapmap]
rs10880102	0.81[JPT][hapmap]
rs11180849	0.88[CHB][hapmap]
rs11180852	0.86[CHB][hapmap]
rs11180860	0.88[CHB][hapmap]
rs11180868	0.88[CHB][hapmap]
rs11180873	0.88[CHB][hapmap]
rs11180874	0.88[CHB][hapmap]
rs11180875	0.89[CHB][hapmap]
rs11180879	0.89[CHB][hapmap]
rs11180883	0.89[CHB][hapmap]
rs11180886	0.89[CHB][hapmap]
rs11180903	0.89[CHB][hapmap]
rs11180913	0.89[CHB][hapmap]
rs11180915	0.88[CHB][hapmap]
rs11180917	0.89[CHB][hapmap]
rs11180921	0.88[CHB][hapmap]
rs11180922	0.88[CHB][hapmap]
rs11180928	0.89[CHB][hapmap]
rs11180932	0.88[CHB][hapmap]
rs11180935	0.89[CHB][hapmap]
rs11180941	0.89[CHB][hapmap]
rs11180944	0.89[CHB][hapmap]
rs11180947	0.89[CHB][hapmap]
rs11180948	0.89[CHB][hapmap]
rs11180949	0.89[CHB][hapmap]
rs11180950	0.82[CHB][hapmap]
rs11180952	0.89[CHB][hapmap]
rs11180954	0.88[CHB][hapmap]
rs11180959	0.89[CHB][hapmap]
rs11180962	0.88[CHB][hapmap]
rs11180963	0.88[CHB][hapmap]
rs11180965	0.89[CHB][hapmap]
rs11180966	0.88[CHB][hapmap]
rs11180967	0.89[CHB][hapmap]
rs11180968	0.89[CHB][hapmap]
rs11180969	0.89[CHB][hapmap]
rs11180970	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11180971	1.00[EUR][1000 genomes]
rs11180972	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11180973	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180974	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180975	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180976	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180978	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180982	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11180983	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11180989	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11180995	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180997	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181005	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11181010	0.81[JPT][hapmap]
rs12227303	0.82[JPT][hapmap]
rs12227540	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12228172	0.89[CHB][hapmap]
rs12231433	0.89[CHB][hapmap]
rs12231803	0.89[CHB][hapmap]
rs12232019	0.89[CHB][hapmap]
rs12581707	0.89[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12582204	0.89[CHB][hapmap]
rs12582909	0.82[JPT][hapmap]
rs12582987	0.89[CHB][hapmap]
rs1379766	0.89[CHB][hapmap]
rs1458153	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1458172	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458173	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17129417	0.89[CHB][hapmap]
rs17129436	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17129470	0.81[JPT][hapmap]
rs17835484	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2125289	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2252312	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs285578	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs3214027	0.89[CHB][hapmap]
rs4635145	1.00[EUR][1000 genomes]
rs6582337	1.00[EUR][1000 genomes]
rs713288	1.00[EUR][1000 genomes]
rs725527	0.90[JPT][hapmap]
rs7968280	0.88[CHB][hapmap]
rs7969769	0.89[CHB][hapmap]
rs7979435	0.89[CHB][hapmap]
rs9652045	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41925600-41949800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:41942800-41956800	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41944600-41966200	Weak transcription	Ovary	ovary
4	chr12:41945400-41956800	Weak transcription	Aorta	Aorta
5	chr12:41947200-41948600	Enhancers	Brain Germinal Matrix	brain
6	chr12:41947200-41953000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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