Variant report

Variant	rs11180982
Chromosome Location	chr12:41927069-41927070
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10506194	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506196	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10880080	0.82[ASN][1000 genomes]
rs10880084	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10880090	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880097	0.82[ASN][1000 genomes]
rs11180953	0.82[ASN][1000 genomes]
rs11180957	0.82[ASN][1000 genomes]
rs11180959	0.82[ASN][1000 genomes]
rs11180962	0.82[ASN][1000 genomes]
rs11180963	0.82[ASN][1000 genomes]
rs11180964	0.82[ASN][1000 genomes]
rs11180965	0.82[ASN][1000 genomes]
rs11180966	0.82[ASN][1000 genomes]
rs11180967	0.82[ASN][1000 genomes]
rs11180968	0.82[ASN][1000 genomes]
rs11180969	0.82[ASN][1000 genomes]
rs11180970	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11180971	1.00[EUR][1000 genomes]
rs11180972	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11180973	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180974	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180975	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180976	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180978	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11180989	0.82[ASN][1000 genomes]
rs11180995	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180997	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181000	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12227540	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12581707	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12582035	0.82[ASN][1000 genomes]
rs1379766	0.82[ASN][1000 genomes]
rs1458153	0.82[ASN][1000 genomes]
rs1458172	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458173	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17129417	0.82[ASN][1000 genomes]
rs17129436	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17835484	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2125289	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252312	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4635145	1.00[EUR][1000 genomes]
rs6582337	1.00[EUR][1000 genomes]
rs713288	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41916000-41927400	Weak transcription	Aorta	Aorta
2	chr12:41925600-41949800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr12:41925800-41944800	Weak transcription	Brain Germinal Matrix	brain

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