Variant report

Variant	rs11181010
Chromosome Location	chr12:41964381-41964382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10219633	0.82[JPT][hapmap]
rs10506194	0.90[JPT][hapmap]
rs10880068	0.81[JPT][hapmap]
rs10880069	0.82[JPT][hapmap]
rs10880070	0.81[JPT][hapmap]
rs10880080	0.81[JPT][hapmap]
rs10880083	0.81[JPT][hapmap]
rs10880084	0.90[JPT][hapmap]
rs10880085	0.82[JPT][hapmap]
rs10880090	0.90[JPT][hapmap]
rs10880097	0.81[JPT][hapmap]
rs10880101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10880102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11180860	0.82[JPT][hapmap]
rs11180873	0.82[JPT][hapmap]
rs11180875	0.82[JPT][hapmap]
rs11180879	0.81[JPT][hapmap]
rs11180883	0.81[JPT][hapmap]
rs11180886	0.81[JPT][hapmap]
rs11180903	0.81[JPT][hapmap]
rs11180913	0.82[JPT][hapmap]
rs11180915	0.81[JPT][hapmap]
rs11180917	0.81[JPT][hapmap]
rs11180921	0.82[JPT][hapmap]
rs11180922	0.82[JPT][hapmap]
rs11180928	0.81[JPT][hapmap]
rs11180932	0.82[JPT][hapmap]
rs11180935	0.81[JPT][hapmap]
rs11180941	0.82[JPT][hapmap]
rs11180944	0.82[JPT][hapmap]
rs11180947	0.81[JPT][hapmap]
rs11180948	0.81[JPT][hapmap]
rs11180949	0.82[JPT][hapmap]
rs11180950	0.88[JPT][hapmap]
rs11180952	0.81[JPT][hapmap]
rs11180954	0.82[JPT][hapmap]
rs11180955	0.81[JPT][hapmap]
rs11180959	0.82[JPT][hapmap]
rs11180962	0.82[JPT][hapmap]
rs11180963	0.82[JPT][hapmap]
rs11180964	0.82[JPT][hapmap]
rs11180965	0.82[JPT][hapmap]
rs11180968	0.82[JPT][hapmap]
rs11180969	0.81[JPT][hapmap]
rs11180970	0.91[JPT][hapmap]
rs11180972	0.91[JPT][hapmap]
rs11180973	0.91[JPT][hapmap]
rs11180974	0.91[JPT][hapmap]
rs11180975	0.91[JPT][hapmap]
rs11180976	0.91[JPT][hapmap]
rs11180978	0.91[JPT][hapmap]
rs11180983	0.86[JPT][hapmap]
rs11180989	0.90[JPT][hapmap]
rs11180995	0.91[JPT][hapmap]
rs11180997	0.90[JPT][hapmap]
rs11181000	0.81[JPT][hapmap]
rs11181005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181012	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181013	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181015	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181019	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11181020	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11181023	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11181025	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12227303	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12227540	0.90[JPT][hapmap]
rs12228172	0.81[JPT][hapmap]
rs12230351	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12231433	0.82[JPT][hapmap]
rs12581662	1.00[EUR][1000 genomes]
rs12582204	0.81[JPT][hapmap]
rs12582909	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582987	0.82[JPT][hapmap]
rs1379766	0.81[JPT][hapmap]
rs1458153	0.90[JPT][hapmap]
rs1458172	0.90[JPT][hapmap]
rs1458173	0.91[JPT][hapmap]
rs1497182	1.00[EUR][1000 genomes]
rs17129470	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17129528	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17129591	1.00[EUR][1000 genomes]
rs17129603	1.00[EUR][1000 genomes]
rs17129637	1.00[EUR][1000 genomes]
rs17129723	1.00[EUR][1000 genomes]
rs17129727	1.00[EUR][1000 genomes]
rs17835484	0.90[JPT][hapmap]
rs2122796	1.00[EUR][1000 genomes]
rs2125289	0.90[JPT][hapmap]
rs285578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3214027	0.81[JPT][hapmap]
rs60761629	1.00[EUR][1000 genomes]
rs725527	0.90[JPT][hapmap]
rs754143	1.00[EUR][1000 genomes]
rs7968280	0.82[JPT][hapmap]
rs7969769	0.81[JPT][hapmap]
rs7979088	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832385	chr12:41959363-41966261	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41944600-41966200	Weak transcription	Ovary	ovary
2	chr12:41957400-41966200	Weak transcription	Aorta	Aorta
3	chr12:41957800-41965000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:41958000-41966800	Weak transcription	Colon Smooth Muscle	Colon
5	chr12:41959400-41970800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:41961400-41968600	Weak transcription	Fetal Brain Female	brain
7	chr12:41961600-41966600	Weak transcription	Brain Germinal Matrix	brain

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