Variant report
| Variant | rs60761629 |
|---|---|
| Chromosome Location | chr12:42003190-42003191 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:41994793..41997112-chr12:42000888..42003362,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10880101 | 1.00[EUR][1000 genomes] |
| rs10880102 | 1.00[EUR][1000 genomes] |
| rs11181005 | 1.00[EUR][1000 genomes] |
| rs11181010 | 1.00[EUR][1000 genomes] |
| rs11181012 | 1.00[EUR][1000 genomes] |
| rs11181013 | 1.00[EUR][1000 genomes] |
| rs11181015 | 1.00[EUR][1000 genomes] |
| rs11181019 | 1.00[EUR][1000 genomes] |
| rs11181020 | 1.00[EUR][1000 genomes] |
| rs11181023 | 1.00[EUR][1000 genomes] |
| rs11181025 | 1.00[EUR][1000 genomes] |
| rs12227303 | 1.00[EUR][1000 genomes] |
| rs12230351 | 1.00[EUR][1000 genomes] |
| rs12581662 | 1.00[EUR][1000 genomes] |
| rs12582909 | 1.00[EUR][1000 genomes] |
| rs1497182 | 1.00[EUR][1000 genomes] |
| rs17129470 | 1.00[EUR][1000 genomes] |
| rs17129528 | 1.00[EUR][1000 genomes] |
| rs17129591 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17129603 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17129637 | 1.00[EUR][1000 genomes] |
| rs17129723 | 1.00[EUR][1000 genomes] |
| rs17129727 | 1.00[EUR][1000 genomes] |
| rs185937 | 0.99[ASN][1000 genomes] |
| rs2122796 | 1.00[EUR][1000 genomes] |
| rs286977 | 0.99[ASN][1000 genomes] |
| rs286995 | 0.99[ASN][1000 genomes] |
| rs287034 | 0.99[ASN][1000 genomes] |
| rs287035 | 0.90[ASN][1000 genomes] |
| rs287036 | 0.99[ASN][1000 genomes] |
| rs287038 | 0.94[ASN][1000 genomes] |
| rs287041 | 0.99[ASN][1000 genomes] |
| rs287046 | 0.99[ASN][1000 genomes] |
| rs287047 | 0.99[ASN][1000 genomes] |
| rs287049 | 0.99[ASN][1000 genomes] |
| rs287051 | 0.99[ASN][1000 genomes] |
| rs407628 | 0.99[ASN][1000 genomes] |
| rs426443 | 0.99[ASN][1000 genomes] |
| rs59284651 | 0.99[ASN][1000 genomes] |
| rs7308874 | 0.97[ASN][1000 genomes] |
| rs7310375 | 0.97[ASN][1000 genomes] |
| rs754143 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7979088 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3337301 | chr12:41851654-42093677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899040 | chr12:41905897-42181706 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42000200-42003800 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr12:42000600-42012000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
