Variant report

Variant	rs1497182
Chromosome Location	chr12:42113086-42113087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10880101	1.00[EUR][1000 genomes]
rs10880102	1.00[EUR][1000 genomes]
rs11181005	1.00[EUR][1000 genomes]
rs11181010	1.00[EUR][1000 genomes]
rs11181012	1.00[EUR][1000 genomes]
rs11181013	1.00[EUR][1000 genomes]
rs11181015	1.00[EUR][1000 genomes]
rs11181019	1.00[EUR][1000 genomes]
rs11181020	1.00[EUR][1000 genomes]
rs11181023	1.00[EUR][1000 genomes]
rs11181025	1.00[EUR][1000 genomes]
rs12227303	1.00[EUR][1000 genomes]
rs12230351	1.00[EUR][1000 genomes]
rs12581662	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12582909	1.00[EUR][1000 genomes]
rs17129470	1.00[EUR][1000 genomes]
rs17129528	1.00[EUR][1000 genomes]
rs17129591	1.00[EUR][1000 genomes]
rs17129603	1.00[EUR][1000 genomes]
rs17129637	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17129723	1.00[EUR][1000 genomes]
rs17129727	1.00[EUR][1000 genomes]
rs2122796	1.00[EUR][1000 genomes]
rs60761629	1.00[EUR][1000 genomes]
rs754143	1.00[EUR][1000 genomes]
rs7979088	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42103000-42118800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:42110400-42113800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:42110800-42113600	Weak transcription	Brain Germinal Matrix	brain
4	chr12:42112600-42114400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:42113000-42113200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:42113000-42113800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:42113000-42113800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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