Variant report
| Variant | rs7979088 |
|---|---|
| Chromosome Location | chr12:42119808-42119809 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:42116428..42118645-chr12:42119416..42120993,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10880101 | 1.00[EUR][1000 genomes] |
| rs10880102 | 1.00[EUR][1000 genomes] |
| rs11181005 | 1.00[EUR][1000 genomes] |
| rs11181010 | 1.00[EUR][1000 genomes] |
| rs11181012 | 1.00[EUR][1000 genomes] |
| rs11181013 | 1.00[EUR][1000 genomes] |
| rs11181015 | 1.00[EUR][1000 genomes] |
| rs11181019 | 1.00[EUR][1000 genomes] |
| rs11181020 | 1.00[EUR][1000 genomes] |
| rs11181023 | 1.00[EUR][1000 genomes] |
| rs11181025 | 1.00[EUR][1000 genomes] |
| rs12227303 | 1.00[EUR][1000 genomes] |
| rs12230351 | 1.00[EUR][1000 genomes] |
| rs12581662 | 1.00[EUR][1000 genomes] |
| rs12582909 | 1.00[EUR][1000 genomes] |
| rs1497182 | 1.00[EUR][1000 genomes] |
| rs17129470 | 1.00[EUR][1000 genomes] |
| rs17129528 | 1.00[EUR][1000 genomes] |
| rs17129591 | 1.00[EUR][1000 genomes] |
| rs17129603 | 1.00[EUR][1000 genomes] |
| rs17129637 | 1.00[EUR][1000 genomes] |
| rs17129723 | 1.00[EUR][1000 genomes] |
| rs17129727 | 1.00[EUR][1000 genomes] |
| rs2122796 | 1.00[EUR][1000 genomes] |
| rs60761629 | 1.00[EUR][1000 genomes] |
| rs754143 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899040 | chr12:41905897-42181706 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv832386 | chr12:42017259-42189476 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899043 | chr12:42058138-42313665 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv899044 | chr12:42058138-42321161 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv899045 | chr12:42118062-42174431 | Weak transcription Enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42119200-42121800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
