Variant report

Variant	rs12581662
Chromosome Location	chr12:42053872-42053873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10880101	1.00[EUR][1000 genomes]
rs10880102	1.00[EUR][1000 genomes]
rs11181005	1.00[EUR][1000 genomes]
rs11181010	1.00[EUR][1000 genomes]
rs11181012	1.00[EUR][1000 genomes]
rs11181013	1.00[EUR][1000 genomes]
rs11181015	1.00[EUR][1000 genomes]
rs11181019	1.00[EUR][1000 genomes]
rs11181020	1.00[EUR][1000 genomes]
rs11181023	1.00[EUR][1000 genomes]
rs11181025	1.00[EUR][1000 genomes]
rs12227303	1.00[EUR][1000 genomes]
rs12230351	1.00[EUR][1000 genomes]
rs12582909	1.00[EUR][1000 genomes]
rs1497182	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17129470	1.00[EUR][1000 genomes]
rs17129528	1.00[EUR][1000 genomes]
rs17129591	1.00[EUR][1000 genomes]
rs17129603	1.00[EUR][1000 genomes]
rs17129637	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17129723	1.00[EUR][1000 genomes]
rs17129727	1.00[EUR][1000 genomes]
rs2122796	1.00[EUR][1000 genomes]
rs60761629	1.00[EUR][1000 genomes]
rs7308874	0.80[ASN][1000 genomes]
rs7310375	0.80[ASN][1000 genomes]
rs754143	1.00[EUR][1000 genomes]
rs7979088	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899041	chr12:42005690-42072514	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870246	chr12:42028555-42066192	Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv899042	chr12:42031131-42072514	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1040209	chr12:42031660-42060070	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1053183	chr12:42037480-42059813	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1053830	chr12:42037480-42060070	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv520892	chr12:42038171-42058138	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv558701	chr12:42038171-42105409	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42053000-42055000	Weak transcription	Fetal Brain Male	brain
2	chr12:42053800-42054400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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