Variant report
| Variant | rs59284651 |
|---|---|
| Chromosome Location | chr12:42007279-42007280 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs17129591 | 1.00[ASN][1000 genomes] |
| rs17129603 | 1.00[ASN][1000 genomes] |
| rs185937 | 1.00[ASN][1000 genomes] |
| rs286977 | 1.00[ASN][1000 genomes] |
| rs286995 | 1.00[ASN][1000 genomes] |
| rs287034 | 1.00[ASN][1000 genomes] |
| rs287035 | 0.91[ASN][1000 genomes] |
| rs287036 | 1.00[ASN][1000 genomes] |
| rs287038 | 0.95[ASN][1000 genomes] |
| rs287041 | 1.00[ASN][1000 genomes] |
| rs287046 | 1.00[ASN][1000 genomes] |
| rs287047 | 1.00[ASN][1000 genomes] |
| rs287049 | 1.00[ASN][1000 genomes] |
| rs287051 | 1.00[ASN][1000 genomes] |
| rs407628 | 1.00[ASN][1000 genomes] |
| rs426443 | 1.00[ASN][1000 genomes] |
| rs60761629 | 0.99[ASN][1000 genomes] |
| rs7308874 | 0.98[ASN][1000 genomes] |
| rs7310375 | 0.98[ASN][1000 genomes] |
| rs754143 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3337301 | chr12:41851654-42093677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899040 | chr12:41905897-42181706 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899041 | chr12:42005690-42072514 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42000600-42012000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
