Variant report

Variant	rs11180934
Chromosome Location	chr12:41864294-41864295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1026462	0.85[CEU][hapmap]
rs1026464	1.00[CEU][hapmap]
rs10785240	0.80[JPT][hapmap]
rs10785254	0.84[JPT][hapmap]
rs10785264	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10785265	0.85[CEU][hapmap]
rs10785266	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10880054	0.80[JPT][hapmap]
rs10880071	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs10880073	0.95[JPT][hapmap]
rs10880076	0.91[CEU][hapmap]
rs10880080	0.87[ASN][1000 genomes]
rs11180928	0.86[ASN][1000 genomes]
rs11180932	0.87[ASN][1000 genomes]
rs11180935	0.90[ASN][1000 genomes]
rs11180938	0.90[ASN][1000 genomes]
rs11180944	0.90[ASN][1000 genomes]
rs11180946	0.90[ASN][1000 genomes]
rs11180947	0.90[ASN][1000 genomes]
rs11180948	0.90[ASN][1000 genomes]
rs11180949	0.90[ASN][1000 genomes]
rs11180950	0.90[ASN][1000 genomes]
rs11180952	0.90[ASN][1000 genomes]
rs11180953	0.87[ASN][1000 genomes]
rs11180957	0.87[ASN][1000 genomes]
rs11180959	0.87[ASN][1000 genomes]
rs11180962	0.87[ASN][1000 genomes]
rs11180963	0.87[ASN][1000 genomes]
rs11180964	0.87[ASN][1000 genomes]
rs11180965	0.87[ASN][1000 genomes]
rs11180966	0.87[ASN][1000 genomes]
rs11180967	0.87[ASN][1000 genomes]
rs11180968	0.87[ASN][1000 genomes]
rs11180969	0.87[ASN][1000 genomes]
rs11180999	0.86[CEU][hapmap]
rs1160183	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1160184	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1160748	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1160749	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11614231	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12582035	0.87[ASN][1000 genomes]
rs1350429	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1350430	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1379763	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1379766	0.87[ASN][1000 genomes]
rs1379768	0.85[CEU][hapmap]
rs1379769	0.93[CEU][hapmap]
rs1379774	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1379775	1.00[JPT][hapmap]
rs1458156	0.96[CEU][hapmap]
rs1458157	0.96[CEU][hapmap]
rs1458158	0.96[CEU][hapmap]
rs1458159	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1458165	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs1458166	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1458167	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1458168	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1471161	0.85[CEU][hapmap]
rs1534280	0.80[JPT][hapmap]
rs1551593	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1551596	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1598894	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17129417	0.87[ASN][1000 genomes]
rs1841025	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1870285	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1870286	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2125287	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2204591	0.81[JPT][hapmap]
rs2250009	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2250908	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2251349	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2251684	0.86[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2255035	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2255145	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2405919	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2446143	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2446144	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2468310	0.86[CEU][hapmap]
rs2468314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2468315	0.93[CEU][hapmap]
rs2468317	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2608692	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608696	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608697	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608702	0.96[CEU][hapmap]
rs2608703	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608704	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608706	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608707	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608708	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2608711	0.89[CEU][hapmap]
rs2608715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2608718	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2710264	0.89[CEU][hapmap]
rs2730803	0.96[CEU][hapmap]
rs2730805	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2730807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2730809	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2730814	0.96[CEU][hapmap]
rs2730817	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2730819	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2730820	0.85[CEU][hapmap]
rs2730821	0.87[CEU][hapmap]
rs2730822	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2730828	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2730829	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2730830	0.85[CEU][hapmap]
rs2733274	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2733275	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2733278	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2733282	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2733287	0.96[CEU][hapmap]
rs2733289	0.86[CEU][hapmap]
rs2733293	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2733298	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2733299	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs285556	0.85[CEU][hapmap]
rs285560	0.85[CEU][hapmap]
rs285575	0.84[CEU][hapmap]
rs285590	0.85[CEU][hapmap]
rs285592	0.85[CEU][hapmap]
rs285593	0.85[CEU][hapmap]
rs285595	0.85[CEU][hapmap]
rs4584644	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7298808	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7954518	0.86[CEU][hapmap]
rs7968280	0.86[ASN][1000 genomes]
rs7977318	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs897973	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs971998	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs981012	0.86[CEU][hapmap]
rs981014	0.86[CEU][hapmap]
rs989904	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs996356	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41860200-41869200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41861000-41866600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:41861000-41866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:41861400-41870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:41861400-41870400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:41862000-41866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:41862000-41869800	Weak transcription	Brain Germinal Matrix	brain
8	chr12:41862000-41870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:41862200-41866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:41862200-41869400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr12:41863000-41866400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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