Variant report

Variant	rs11614231
Chromosome Location	chr12:41781406-41781407
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 189 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs1000147	0.89[JPT][hapmap]
rs10467086	0.85[JPT][hapmap]
rs10506186	0.84[JPT][hapmap]
rs10506187	0.84[JPT][hapmap]
rs10506189	0.84[JPT][hapmap]
rs10506191	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10506192	1.00[CEU][hapmap]
rs10735995	0.96[CEU][hapmap]
rs10748300	0.80[JPT][hapmap]
rs10748301	0.84[JPT][hapmap]
rs10785235	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10785236	0.84[JPT][hapmap]
rs10785238	0.85[JPT][hapmap]
rs10785240	0.84[JPT][hapmap]
rs10785241	0.85[JPT][hapmap]
rs10785242	0.84[JPT][hapmap]
rs10785243	0.84[JPT][hapmap]
rs10785244	0.84[JPT][hapmap]
rs10785245	0.84[JPT][hapmap]
rs10785247	0.84[JPT][hapmap]
rs10785254	0.88[JPT][hapmap]
rs10785255	0.84[JPT][hapmap]
rs10785256	0.85[JPT][hapmap]
rs10785258	1.00[CEU][hapmap]
rs10785259	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10785261	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10785262	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10785263	0.96[CEU][hapmap]
rs10785264	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10785266	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10880038	0.84[JPT][hapmap]
rs10880039	0.85[JPT][hapmap]
rs10880042	0.85[JPT][hapmap]
rs10880043	0.85[JPT][hapmap]
rs10880044	0.84[JPT][hapmap]
rs10880047	0.85[JPT][hapmap]
rs10880053	0.85[JPT][hapmap]
rs10880054	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10880058	0.85[JPT][hapmap]
rs10880061	0.85[JPT][hapmap]
rs10880063	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10880067	1.00[CEU][hapmap]
rs10880071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10880073	0.84[JPT][hapmap]
rs11180834	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11180836	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11180838	0.84[JPT][hapmap]
rs11180843	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11180846	0.84[JPT][hapmap]
rs11180851	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11180863	1.00[CEU][hapmap]
rs11180864	1.00[CEU][hapmap]
rs11180878	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11180934	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1160183	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1160184	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1160748	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1160749	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11835941	1.00[CEU][hapmap]
rs12146801	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12369680	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12370984	0.97[EUR][1000 genomes]
rs12422274	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12578784	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12817575	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1317541	0.84[JPT][hapmap]
rs1350429	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1350430	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1379763	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1379774	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1379775	0.90[JPT][hapmap]
rs1405549	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1405557	0.85[JPT][hapmap]
rs1458159	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1458166	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1458167	0.89[JPT][hapmap]
rs1458168	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1458176	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs1465072	0.84[JPT][hapmap]
rs1527090	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1534279	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1534280	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1544000	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1551593	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1551596	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1598894	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1609058	0.84[JPT][hapmap]
rs1609059	0.85[JPT][hapmap]
rs1841025	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1870285	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1870286	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1902907	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1902909	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1902911	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1918220	0.85[JPT][hapmap]
rs1918221	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918225	0.84[JPT][hapmap]
rs1918226	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1918227	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918236	0.81[JPT][hapmap]
rs2125287	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2141105	0.85[JPT][hapmap]
rs2177974	0.84[JPT][hapmap]
rs2199030	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2204591	0.90[JPT][hapmap]
rs2250009	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2250908	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2251349	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2251684	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2255035	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2255145	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2405911	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2405919	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2446143	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2446144	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2468314	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2468317	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2608692	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2608696	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2608697	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2608703	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2608704	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2608706	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2608707	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2608708	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2608715	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2608718	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2730805	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2730807	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2730809	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2730817	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2730819	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2730822	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2730828	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2730829	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2733274	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2733275	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2733278	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2733282	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2733293	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2733298	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2733299	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2897268	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34220247	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34892771	0.97[EUR][1000 genomes]
rs4430580	0.85[JPT][hapmap]
rs4584644	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4768347	0.85[JPT][hapmap]
rs4768348	0.87[JPT][hapmap]
rs6582332	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6582334	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6582336	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7133365	1.00[CEU][hapmap]
rs7133806	0.85[JPT][hapmap]
rs7298511	0.84[JPT][hapmap]
rs7298808	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7298953	0.85[JPT][hapmap]
rs7299325	0.85[JPT][hapmap]
rs7301366	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7315276	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7315905	0.84[JPT][hapmap]
rs7488531	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7954106	1.00[CEU][hapmap]
rs7956320	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7957823	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7959175	0.84[JPT][hapmap]
rs7960955	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7962343	0.85[JPT][hapmap]
rs7963312	1.00[CEU][hapmap]
rs7967532	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7977318	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7979586	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs897973	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs930905	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs941190	0.84[JPT][hapmap]
rs961337	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs971998	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs9783512	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs989904	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs996356	0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899036	chr12:41777144-41807859	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41776200-41787400	Weak transcription	Aorta	Aorta

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