Variant report

Variant	rs10785264
Chromosome Location	chr12:41802209-41802210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs1000147	0.80[JPT][hapmap]
rs10506191	1.00[CEU][hapmap]
rs10506192	1.00[CEU][hapmap]
rs10735993	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10735994	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10735995	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10785235	1.00[CEU][hapmap]
rs10785240	0.81[JPT][hapmap]
rs10785254	0.84[JPT][hapmap]
rs10785258	1.00[CEU][hapmap]
rs10785261	1.00[CEU][hapmap]
rs10785263	0.96[CEU][hapmap]
rs10785266	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10880054	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10880063	1.00[CEU][hapmap]
rs10880067	1.00[CEU][hapmap]
rs10880071	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10880073	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10880075	0.91[ASN][1000 genomes]
rs10880076	0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs11180836	1.00[CEU][hapmap]
rs11180851	0.96[CEU][hapmap]
rs11180863	1.00[CEU][hapmap]
rs11180864	1.00[CEU][hapmap]
rs11180878	1.00[CEU][hapmap]
rs11180934	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1155220	0.95[ASN][1000 genomes]
rs1160183	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1160184	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1160748	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1160749	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11614231	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11835941	1.00[CEU][hapmap]
rs12314238	0.95[ASN][1000 genomes]
rs12369680	1.00[CEU][hapmap]
rs12817575	1.00[CEU][hapmap]
rs1350429	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[ASN][1000 genomes]
rs1350430	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1379758	0.86[ASN][1000 genomes]
rs1379759	0.86[ASN][1000 genomes]
rs1379760	0.86[ASN][1000 genomes]
rs1379761	0.85[ASN][1000 genomes]
rs1379763	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1379764	0.86[ASN][1000 genomes]
rs1379770	0.86[ASN][1000 genomes]
rs1379771	0.86[ASN][1000 genomes]
rs1379772	0.86[ASN][1000 genomes]
rs1379773	0.95[ASN][1000 genomes]
rs1379774	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1379775	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1379776	0.95[ASN][1000 genomes]
rs1405549	1.00[CEU][hapmap]
rs1458159	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1458165	0.80[JPT][hapmap]
rs1458166	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1458167	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1458168	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1458176	0.96[CEU][hapmap]
rs1471162	0.95[ASN][1000 genomes]
rs1471163	0.95[ASN][1000 genomes]
rs1527090	1.00[CEU][hapmap]
rs1534280	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs1551593	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs1551595	0.95[ASN][1000 genomes]
rs1551596	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1598894	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1841025	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1870285	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1870286	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1902906	0.85[ASN][1000 genomes]
rs1902907	1.00[CEU][hapmap]
rs1902911	1.00[CEU][hapmap]
rs2125286	0.85[ASN][1000 genomes]
rs2125287	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2199030	1.00[CEU][hapmap]
rs2204591	0.82[JPT][hapmap]
rs2250009	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2250908	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2251259	0.94[ASN][1000 genomes]
rs2251349	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2251672	0.88[ASN][1000 genomes]
rs2251683	0.95[ASN][1000 genomes]
rs2251684	0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2255035	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2255145	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2255152	0.86[ASN][1000 genomes]
rs2255404	0.86[ASN][1000 genomes]
rs2405919	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2405921	0.86[ASN][1000 genomes]
rs2446143	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2446144	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2468314	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2468317	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2608689	0.86[ASN][1000 genomes]
rs2608690	0.86[ASN][1000 genomes]
rs2608691	0.80[ASN][1000 genomes]
rs2608692	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2608696	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2608697	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs2608701	0.95[ASN][1000 genomes]
rs2608703	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs2608704	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2608705	0.85[ASN][1000 genomes]
rs2608706	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2608707	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2608708	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2608710	0.95[ASN][1000 genomes]
rs2608715	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2608718	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2730802	0.86[ASN][1000 genomes]
rs2730804	0.91[ASN][1000 genomes]
rs2730805	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2730807	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2730809	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2730810	0.94[ASN][1000 genomes]
rs2730811	0.95[ASN][1000 genomes]
rs2730817	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2730818	0.93[ASN][1000 genomes]
rs2730819	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2730820	0.95[ASN][1000 genomes]
rs2730821	0.95[ASN][1000 genomes]
rs2730822	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2730824	0.86[ASN][1000 genomes]
rs2730828	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[ASN][1000 genomes]
rs2730829	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2733274	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2733275	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2733278	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2733282	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2733291	0.95[ASN][1000 genomes]
rs2733293	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2733297	0.95[ASN][1000 genomes]
rs2733298	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2733299	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2897268	1.00[CEU][hapmap]
rs2957590	0.95[ASN][1000 genomes]
rs35766123	0.95[ASN][1000 genomes]
rs4584644	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4768353	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6582332	1.00[CEU][hapmap]
rs6582334	1.00[CEU][hapmap]
rs7133365	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298808	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[ASN][1000 genomes]
rs7954106	1.00[CEU][hapmap]
rs7956320	1.00[CEU][hapmap]
rs7956499	0.88[EUR][1000 genomes]
rs7957823	1.00[CEU][hapmap]
rs7960955	1.00[CEU][hapmap]
rs7963312	1.00[CEU][hapmap]
rs7977318	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs897973	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs930905	1.00[CEU][hapmap]
rs961337	1.00[CEU][hapmap]
rs971998	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs981012	0.95[ASN][1000 genomes]
rs989904	0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs996356	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899036	chr12:41777144-41807859	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv899038	chr12:41784137-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv818915	chr12:41784997-41811063	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv899039	chr12:41784997-41813207	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv1050627	chr12:41789891-41809009	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41801600-41805000	Weak transcription	Fetal Brain Male	brain
2	chr12:41802000-41802400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:41802000-41802400	Enhancers	Brain Hippocampus Middle	brain

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